New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1979269	NA (NA)	20 (0.680)	18/288	0.7	95.3%	intergenic (‑54/‑484)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913_3_pae_tpiA	2490618 =	1 (0.030)					coding (1333/1695 nt)	oxc	oxalyl CoA decarboxylase, ThDP‑dependent

AGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGG‑ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/1979122‑1979269 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCA  >  NC_000913_3_pae_tpiA/2490618‑2490766                                                                                                                                                                                                                                                                                                            AGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGG‑ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCACAAAGACCATCATACACTAAAGCAGTAAGTTGGCAGCATCACC                                                                                                                                                      <  2:88985/149‑1                 TCCGGGGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGG‑ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACCCTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGA                                                                                                                                      <  1:30768/149‑1                 TCCGGCGGTGCTGTTGCCGTTACGTACCACCCCGTCAGTAGCTGAA‑AGGAGGGAACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGA                                                                                                                                      <  1:15142/149‑1                          GCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGG‑ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAA                                                                                                                             <  1:221178/149‑1                                 CCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGG‑ACAGCTGATAGAAACAGAAGCCACTGCAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGC                                                                                                                      <  1:384146/149‑1                                  CGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGG‑ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCT                                                                                                                     >  1:241122/1‑149                                        GCACGACCCCGTCATTAGCTGAAGAGGAGGT‑ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACC                                                                                                               <  2:91823/149‑1                                                         GCTGAACAGGAGGG‑ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATAC                                                                                              >  1:318296/1‑149                                                             AACAGGAGGG‑ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGAT                                                                                          <  2:497757/149‑1                                                                 GGAGGG‑AAAGCTGATAGACACAGAAGCCACTGGAGCACCTCAAAAACACCATCCTACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCC                                                                                      <  1:85235/149‑1                                                                   AGGG‑ACAGCTGATAGAAACAGAAGCCAGTGGAGCACCGCAAAAACACGTTTATAGCGTAAATCAGTAAGTTGGCAGCATCAGCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCAT                                                                                    <  2:92575/149‑1                                                                     GG‑ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGA                                                                                  <  1:34943/149‑1                                                                              aATAGAAACAGAAGCCACTGGAGCCCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAG                                                                          <  1:341421/148‑1                                                                              GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAG                                                                          <  1:4198/149‑1                                                                                           GCCACCGGAGCACCCCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCACCACCAATGGCGACAACCGGAGAACCACAAGCCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATCACACCCCACGTACCACAATCCA                                                             <  2:510446/149‑1                                                                                                               ACAACAACATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTATCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATAC                                         <  2:221901/149‑1                                                                                                                 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTAC                                                                      <  2:329925/118‑1                                                                                                                 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTAC                                                                      >  1:329925/1‑118                                                                                                                        TACACTAAATCAGGAAGTTGGCAGCATCCCCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCTAATACTGATGCCCACGACACGCCAGGTACCACGACCCAGACGCTGACGTGGTTTATAGATATCAATA                                <  2:217010/149‑1                                                                                                                           ACTAAATCAGTAAGTTGGCAGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATCTCAATAATA                             >  1:88636/1‑149                                                                                                                                              AGCATCACCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCTTTATCCAGGG          >  1:148804/1‑149                                                                                                                                                      CAATGGCGACAACCGGAGAACCAGAAGTCACGCTACCACCGATGGCATAGCCCATACCGACACCCATGACACCCCAGGTACCACAATCAAAATAACGACTTCGTTTATACACATCAATAAAACTTCCTACATTATCCAGGGTATTTGCA  >  2:116722/1‑149                                                                                                                                                                                                                                                                                                            AGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGG‑ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/1979122‑1979269 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCA  >  NC_000913_3_pae_tpiA/2490618‑2490766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.