New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2456281 =	42 (1.420)	3 (0.110)	3/260	3.8	7.8%	intergenic (‑635/+46)	yfcV/sixA	putative fimbrial‑like adhesin protein/phosphohistidine phosphatase
	?	NC_000913_3_pae_tpiA	2456318 =	33 (1.250)					intergenic (‑672/+9)	yfcV/sixA	putative fimbrial‑like adhesin protein/phosphohistidine phosphatase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATTCATTTCAACATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTTACGCTGGCAATGGCCGAGGTGG  >  NC_000913_3_pae_tpiA/2456136‑2456427                                                                                                                                                  |                                                                                                                                                   ttattCATTTCAACATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGACTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAAtt                                                                                                                                                 >  1:408358/1‑149 (MQ=255)      cATTTCAACATTTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATACTAGTTAGGTTGACAGATATCCTCTGCCTGATGAGCAATTATGcc                                                                                                                                            <  1:55418/149‑1 (MQ=255)        tttCAACATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCa                                                                                                                                          >  1:302962/1‑149 (MQ=255)         ttCAACATGTAACTTCGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGTTATCCGCTGCCTGATGAGCAATTATGCCCaa                                                                                                                                         >  2:226412/1‑149 (MQ=255)          tCAACATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCGTGATGAGCAATTATGCCCAAt                                                                                                                                        >  1:34542/1‑149 (MQ=255)             aCATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGaa                                                                                                                                     <  1:428381/149‑1 (MQ=255)                                 tCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAAt                                                                                                                 >  2:237567/1‑149 (MQ=255)                                  cAAGATACGCGGAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAAtt                                                                                                                >  1:321254/1‑149 (MQ=255)                                              agaaaaATGATTTGCGAATGTAAGTTAAAGGAGTTTTATTTATAGATTGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGATGGCTGATGGGCAATTATGCGCAATGAATCTACCTCATTGGGGATAATTTGGAACtcatca                                                                                                    <  2:185266/149‑1 (MQ=255)                                                     tACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCt                                                                                             >  2:422858/1‑149 (MQ=255)                                                        tttGCGAATGAAAGTTAATGGTGGTGTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCtttt                                                                                          <  2:78299/149‑1 (MQ=255)                                                        tttCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATa                                                                                                >  1:79173/1‑143 (MQ=255)                                                        tttCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATa                                                                                                <  2:79173/143‑1 (MQ=255)                                                              aaTGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATc                                                                                    >  1:375617/1‑149 (MQ=255)                                                                 gAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTg                                                                                                                         <  2:315734/109‑1 (MQ=255)                                                                 gAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTg                                                                                                                         >  1:315734/1‑109 (MQ=255)                                                                  aaaGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGACAGCTTTTGCCATCTTCa                                                                                <  1:237567/149‑1 (MQ=255)                                                                     tttAAAGGTGTTTTATTCAGAGATTGTGAGAGGCTTCCGTAGTAGTGAGGTTGACAGATAGCCGCTGACTGATGAGCAATTATGCCCAATGAACCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGAt                                                                             <  2:25254/148‑1 (MQ=255)                                                                      ttAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGAtt                                                                            >  1:36764/1‑149 (MQ=255)                                                                         aaGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTaca                                                                         >  1:277687/1‑149 (MQ=255)                                                                           ggTGTTTTATTTATAGATGGGGAGAGTTTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACg                                                                       <  2:47491/149‑1 (MQ=255)                                                                            gtgtTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTc                                                                                 >  2:258839/1‑138 (MQ=255)                                                                            gtgtTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTc                                                                                 <  1:258839/138‑1 (MQ=255)                                                                                  tatttatAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCAt                                                                >  1:475229/1‑149 (MQ=255)                                                                                   atttatAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATc                                                               <  1:21959/149‑1 (MQ=255)                                                                                    tataaaGATGGGGAGAGTCTCCGATAGTAGTGAGGTTGACCGATATCCGATGCCTGATGAGCAATTATGCCCAATCAATCGACGTCATTAGGCATAATTTGGAACTCCTCAGATAGCTTTTGACATCTTCAGGATACACCGGTTCATCt                                                              >  2:10488/6‑149 (MQ=255)                                                                                              gggAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGaa                                                    <  2:300908/149‑1 (MQ=255)                                                                                               ggAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAAtt                                                                                                                                                 <  1:478787/55‑1 (MQ=255)                                                                                               ggAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAAtt                                                                                                                                                 >  2:478787/1‑55 (MQ=255)                                                                                               ggAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAAt                                                   >  2:312962/1‑149 (MQ=255)                                                                                               ggAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCACAGTACGGGGGCTCATCTGCCAGTTGAAt                                                   <  2:60126/149‑1 (MQ=255)                                                                                                       ttCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCCGTTGAATGTGCCGtt                                           >  1:521036/1‑149 (MQ=255)                                                                                                        tCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGACGttt                                          <  1:312962/149‑1 (MQ=255)                                                                                                              gtagtGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCCGATAGCTTTTGCCAGCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCtt                                    <  2:321254/149‑1 (MQ=255)                                                                                                                       ttGACAGATATCCGCTCCCCGAAGCGCAATTATGCCCAAACAATCTACCTCATTGGGTATAATTTGGAACTCATCAGATAGCCTTTTACATCTTGAGATTACACGGGCTAATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGc                           <  1:187817/149‑1 (MQ=255)                                                                                                                         gACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTCCCCGTTGACTGTCGCGTTTCCGCTTTCATCAAGCGt                         >  2:269783/1‑149 (MQ=255)                                                                                                                            aGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTTAc                      >  1:374880/1‑149 (MQ=255)                                                                                                                                    gCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTTACGCTGGCaa              >  1:392765/1‑149 (MQ=255)                                                                                                                                    gCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTTACGCTGGCaa              >  1:482251/1‑149 (MQ=255)                                                                                                                                        ccTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTTACGCTGGCAATGGc          <  1:279873/149‑1 (MQ=255)                                                                                                                                            atgaGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGCTAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTTACGCTGGCAACAGCCGAg      >  1:45655/1‑149 (MQ=255)                                                                                                                                                gCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTTACGCTGGCAATGGCCGAggtgg  <  1:401134/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   TTATTCATTTCAACATGTAACTTTGGGCAAAATCAAGATACGCGCAGAAGAATACTTTCCGAATGAAAGTTAAAGGTGTTTTATTTATAGATGGGGAGAGTCTTCGATAGTAGTGAGGTTGACAGATATCCGCTGCCTGATGAGCAATTATGCCCAATGAATCTACCTCATTGGGCATAATTTGGAACTCATCAGATAGCTTTTGCCATCTTCAGATTACACGGGCTCATCTGCCAGTTGAATGTGCCGTTTCCGCTTTCATCAAGCGTTACGCTGGCAATGGCCGAGGTGG  >  NC_000913_3_pae_tpiA/2456136‑2456427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.