| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 2440343 = | NA (NA) | 4 (0.140) | 4/278 | 3.6 | NA | noncoding (1/36 nt) | REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_pae_tpiA | 2440375 = | NA (NA) | noncoding (33/36 nt) | REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTCCAGC > NC_000913_3_pae_tpiA/2440227‑2440517 | ggAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGATCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCACGTCTACTCCGAcc > 1:377501/1‑149 (MQ=255) cAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGGTTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGaa < 1:330933/149‑1 (MQ=255) aaGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCttt > 1:324323/1‑149 (MQ=255) tttGGCTGGAACTGGCGGCGAGTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCTACCTACTTCGGATTAATCTTTccg > 2:49063/1‑147 (MQ=255) gCCTGGAACTGGCGGCGATTGTCAATGTTGTGAAAAAGGGAACCATCAGGTTCGCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCtt < 1:133336/149‑1 (MQ=255) cTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTgc < 1:240277/149‑1 (MQ=255) tGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTAGCGCGTCTACTCCGACCTCCTGCGAATTCATCTTTCAGCTTgcg > 2:414658/1‑149 (MQ=255) tGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCttt > 1:156989/1‑134 (MQ=255) tGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCttt < 2:156989/134‑1 (MQ=255) gcgATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTAAGTTAGTGCCGGAGGCCGCATTGGCGAGTAACGTCGGCTATTACTAAGTTGCGTCTACTCCACCCTACTGCGAGTTAATGTTTAAGATTGAGAATTatgagcc > 1:121145/1‑143 (MQ=255) cgcttGTCAAGGGTGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGt < 1:174938/146‑1 (MQ=255) aaTGATGTGAACAAGGGAACCATCAGGTTCACTTTTGCGTTAGTGCAGGAGACCAGATTGGACCGTAACCTCGGATGCGACGCTGGCGCGTCAACTCCGACCTACTGCGAATTAATCGCTAAGCTTCAGCCTTACCATCGTCGCGTTgc > 2:475006/1‑148 (MQ=255) atgatgTGAAAAAGGGAACCACCAGTTTCGCGTGTACGCTCGTAAAGGCCAGGCCATTGGCGCGTACAGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGt < 1:249535/149‑1 (MQ=255) tgtgCACAAGCGCACCCTCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTgccg < 2:493494/149‑1 (MQ=255) aaGGGAACGAGCAGGTTCCCTTTGGCGGTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCGGCGTGGCGTTGGTGCCgccgaagc < 2:114405/149‑1 (MQ=255) gAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTCCCAGCGTGGCGACGGTGCCgccgaagcagaa > 1:427640/1‑149 (MQ=255) tCAGGTTCCCTTTGGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCTGAAGCCGAAGCTGtt < 2:488582/149‑1 (MQ=255) cAGGTTCCCGTGTGCGTTGGTGCCGTAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCTGACCTACTGCGCATCAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTa < 2:124524/149‑1 (MQ=255) cccTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATa > 1:107421/1‑149 (MQ=255) ttttGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCCCGTATACTCAGAACTATTGCGAAGTAATCTTGCAGCTTGCGCATTCCCACCGTGCCGTTGGTGCCGCCCATGCCGCAGGTGTTAGTCATACCg > 2:83974/1‑149 (MQ=255) ttGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACggt < 1:369317/149‑1 (MQ=255) ccGGATGGGCGCGTAACGTCGGATGCGACGCTGGCGCGGCTACTCCGACCTACTGCGAATTAACCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGt < 1:175161/149‑1 (MQ=255) gcgcGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCgg > 1:305631/1‑149 (MQ=255) gcgTAACGTCGGATGCGACGCTGGCGCGGCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCAATACCATCGGGGCTTTTGTTCCGCCGAAGCCGAAGCTGTTAGACAGAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTc < 2:83975/149‑1 (MQ=255) gcgTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGCTTCGGTCACGATGTTCAGACCCGCCGCCTGCt > 2:207738/1‑149 (MQ=255) ccacaccGACCTAGTGCGAATTAATCTTTCAGCGTGCGCATTACCCGCGGGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAAACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTc < 2:412594/144‑1 (MQ=255) tACTCCGACCTACGGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTcc < 2:421755/149‑1 (MQ=255) tCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTCCAGc > 1:25309/1‑149 (MQ=255) | GGAAATCGACAAAGCGGGAAGTTTGCCTGGAACTGGCGGCGATTGTCAATGATGTGAAAAAGGGAACCATCAGGTTCCCTTTTGCGTTAGTGCCGGAGGCCGCATTGGCGCGTAACGTCGGATGCGACGCTGGCGCGTCTACTCCGACCTACTGCGAATTAATCTTTCAGCTTGCGCATTACCAGCGTGGCGTTGGTGCCGCCGAAGCCGAAGCTGTTAGACATAACGGTGGTCAGTTCGCGATCGGTCGTTTCGGTCACGATGTTCAGACCCGCAGCCTGCTCGTCCAGC > NC_000913_3_pae_tpiA/2440227‑2440517 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |