| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3418147 = | 23 (0.780) | 3 (0.110) | 3/274 | 4.0 | 12.6% | intergenic (+10/‑243) | acrF/yhdV | multidrug efflux system protein/putative outer membrane protein |
| ? | NC_000913_3_pae_tpiA | 3418173 = | 20 (0.720) | intergenic (+36/‑217) | acrF/yhdV | multidrug efflux system protein/putative outer membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCTTCACTATTTTTACAATTCACATAATTTGTCATTATTCATTCCGCAAGATTTATAACCTCCGGTG > NC_000913_3_pae_tpiA/3418032‑3418316 | cGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCa < 1:404489/149‑1 (MQ=255) aaggaCTGGTCTCAGCAACTTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATtaataa < 2:493354/148‑1 (MQ=255) aggaATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAg < 1:403867/149‑1 (MQ=255) aTGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGatat < 1:100031/149‑1 (MQ=255) gTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATAttct > 1:452455/1‑149 (MQ=255) cTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCGGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTGCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAACAATTCGTCTGCTCACTCTTTa > 2:101062/1‑149 (MQ=255) tGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATAGTCTTATGCTCACTCTTGaa > 1:56004/1‑149 (MQ=255) gCAATCTTCTTCGTGCCGGTGTTCCTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTCTCGGGGGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTaaaa < 1:176086/149‑1 (MQ=255) aaTCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGc < 1:86634/149‑1 (MQ=255) aaTCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTAAATCTTTAAAAGc > 1:14575/1‑149 (MQ=255) cttcttCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCttt < 2:374101/149‑1 (MQ=255) ttcttcGTACCGGTGTTCTTTGGGGTGATCCGCCTTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTTCAGTGCAACCCATAAAAATTATTAAGATATTCTTCTGCTCCCTTTTGAGAAGCTTTc > 2:93346/1‑149 (MQ=255) ttCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTTACTCTTTAAAAGCTTTCTATAGTTCCCGCTcc > 2:154503/1‑149 (MQ=255) ttCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTcc > 2:338592/1‑149 (MQ=255) tttGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCttt < 2:299951/121‑1 (MQ=255) tttGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCttt > 1:299951/1‑121 (MQ=255) tgATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATATTTCCCGCTCCCTTCACTAtt > 2:317364/1‑149 (MQ=255) ctgcgTTGATCTAAAGGATAAATCAGCAACATAAAGGCGCTTTCGAGTGCTTTTATTCTTTTCAGTGAACCCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCTTCACTATTTTTAc < 2:21508/146‑1 (MQ=255) aaGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCAAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTATCTATAGTTCCGGCTCCCTTCACTATTTTTACAATTCACCTAAtt > 2:169311/1‑149 (MQ=255) ggCGCTTTCGGGTGCCTTTATTATTTCCAGTGAACCCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCTTCACTATTTTTACAATTCACATAATTTGTCATTATTCATTCCGCAAGa < 1:6215/149‑1 (MQ=255) ccTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCTTCACTATTTTTACAATTCACATAATTTGTCATTATTCATTCCGCAAGATTTATAACCTCCgg < 1:477224/149‑1 (MQ=255) tttATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCTTCACTATTTTTACAATTCACATAATTTGTCATTATTCATTCCGCAAGATTTATAACCTCCGGTg > 1:386961/1‑149 (MQ=255) | CGCTGTGGGTATCGGGGTAATGGGAGGAATGGTCTCTGCAACGTTGCTGGCAATCTTCTTCGTACCGGTGTTCTTTGTGGTGATCCGCCGTTGCTTTAAAGGATAAATCAGAAACATAAAGGCGCTTTCGGGTGCCTTTATTATTTCCAGTGAAACCCATAAAAATTAATAAGATATTCTTCTGCTCACTCTTTAAAAGCTTTCTATAGTTCCCGCTCCCTTCACTATTTTTACAATTCACATAATTTGTCATTATTCATTCCGCAAGATTTATAACCTCCGGTG > NC_000913_3_pae_tpiA/3418032‑3418316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |