New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 370015236 (1.220)4 (0.140) 4/288 3.7 10.6% noncoding (17/66 nt) rdlD sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR‑D repeat, with toxic peptide LdrD
?NC_000913_3_pae_tpiA = 3700196 32 (1.090)noncoding (61/66 nt) rdlD sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR‑D repeat, with toxic peptide LdrD
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAG  >  NC_000913_3_pae_tpiA/3700048‑3700342
                                                                                                                                                    |                                                                                                                                                  
aaTCAGGCCAGACTGCCATGCCCAGCTCGGCGAACGGCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGt                                                                                                                                                    <  1:188918/149‑1 (MQ=255)
    aTGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGCGCCCCTTGCGTCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtc                                                                                                                                                >  1:361094/1‑149 (MQ=255)
    aTGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtc                                                                                                                                                >  1:245723/1‑149 (MQ=255)
        cAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtctctc                                                                                                                                            >  1:440889/1‑149 (MQ=255)
          gAAGGGCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACTACGTTTCGCGGCTATTCTTGAGTGGGCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtctctctc                                                                                                                                          <  1:180498/149‑1 (MQ=255)
               ccATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCa                                                                                                                                     >  1:451975/1‑149 (MQ=255)
                       aGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGc                                                                                                                             <  1:164541/149‑1 (MQ=255)
                        gCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGcc                                                                                                                            >  2:159365/1‑149 (MQ=255)
                             gCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAg                                                                                                                       <  2:45493/149‑1 (MQ=255)
                                      atatAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGc                                                                                                              >  1:170825/1‑149 (MQ=255)
                                                 tctgcagtAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGACACCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGCTCTTATCTCTCCAGCAACCACCGCCAACCGGACATATGCCCCCGCAACAt                                                                                                   >  2:499032/7‑149 (MQ=255)
                                                     ttgtAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTtcg                                                                                               <  2:296726/149‑1 (MQ=255)
                                                     ttgtAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTgcg                                                                                               >  2:465791/1‑149 (MQ=255)
                                                                      cgcgGCTATTCTTGAGTGGGCTAGAGTCAAGATTAGCGCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCATCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTc                                                                              <  1:341629/149‑1 (MQ=255)
                                                                          gCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGc                                                                          >  2:87589/1‑149 (MQ=255)
                                                                                cTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGAGTTTTCCCTCTCCAGCAACCAATGCCACCGGGGATAAAGCCCCCGCAACATTGCGCCTCACCCGACCCTTTCCGGCTTGCCg                                                                    >  2:10056/1‑149 (MQ=25)
                                                                                      tGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTAGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGAtt                                                              >  2:505499/1‑149 (MQ=255)
                                                                                         gcTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTa                                                           <  1:243273/148‑1 (MQ=255)
                                                                                            agagTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCCCCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGa                                                        <  2:366086/149‑1 (MQ=255)
                                                                                                tCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCAGGATTGCGGCTGATTCTACGATTGc                                                    >  1:68097/1‑149 (MQ=255)
                                                                                                  aaGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACAAATGCCACCAGGGATAAAGCCCCCGCAACATTACGCCTCACCGGAACCTTTCCGGCTTGCCGCTGAGTCTACGATTGCtt                                                  >  2:180871/1‑149 (MQ=255)
                                                                                                       tAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTAAc                                             <  2:222484/149‑1 (MQ=255)
                                                                                                          cccccGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGt                                          >  2:365157/1‑149 (MQ=255)
                                                                                                             ccGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAg                                       >  2:503962/1‑149 (MQ=255)
                                                                                                             ccGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTAATTCTCCGATTGTTTTTTCCTGTCAg                                       >  2:45115/1‑149 (MQ=255)
                                                                                                                             tGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTcc                       <  1:188239/149‑1 (MQ=255)
                                                                                                                                     tGCAACGTGCGGGGGTTTTCTCTCTCCAGGAACCAATGCCACCAAGGATAAAGCTCCAGCACCATTGCGCATCACCGGAACCTTTCCGGCTTGCCGCTGATTCGACGATTGCTTTTTACTGTCAGAACCCGGCAATCTTCCTCACTgcg               >  1:441756/1‑149 (MQ=25)
                                                                                                                                     tGCAACGTGCGGGGGTTTTCTCTCTCCAGCATCCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTgcg               <  2:421276/149‑1 (MQ=255)
                                                                                                                                     tGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTgcg               <  2:170825/149‑1 (MQ=255)
                                                                                                                                     tGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTgcg               <  2:78080/149‑1 (MQ=255)
                                                                                                                                         aCGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGAt           <  1:27757/149‑1 (MQ=255)
                                                                                                                                                 gggTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCa   >  1:296598/1‑149 (MQ=255)
                                                                                                                                                  ggTTTTCTCTCTCCAGCAACCAATGCCACCAGGAATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAg  >  1:179165/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
AATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGATTGCTTTTTACTGTCAGCACCCGGCAATCTTCCTCATTGCGCGATGCCTTCCAG  >  NC_000913_3_pae_tpiA/3700048‑3700342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.