New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4027573	NA (NA)	4 (0.150)	4/274	3.4	NA	noncoding (252/281 nt)	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences
	?	NC_000913_3_pae_tpiA	= 4027601	NA (NA)					noncoding (280/281 nt)	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATACGCGCACCGGAACAACCCAGCGGATGACC  >  NC_000913_3_pae_tpiA/4027459‑4027749                                                                                                                                               |                                                                                                                                                     tAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTg                                                                                                                                                <  1:81494/149‑1 (MQ=255)  aGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTgg                                                                                                                                               <  2:486282/149‑1 (MQ=255)    tCCGAACCGTAGGCCGGATAAGGCGTGTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGtt                                                                                                                                             <  2:241032/149‑1 (MQ=255)        aaCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAAc                                                                                                                                         <  1:68594/149‑1 (MQ=255)        aaCCGTAGGCCGGATAAGGCGTTTACGCCGCACCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAAc                                                                                                                                         <  2:447690/149‑1 (MQ=255)          ccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAAccc                                                                                                                                       <  1:465131/149‑1 (MQ=255)                          gCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGc                                                                                                                       <  2:390661/149‑1 (MQ=255)                          gCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGc                                                                                                                       >  1:455203/1‑149 (MQ=255)                               tACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATAc                                                                                                                  <  2:362103/149‑1 (MQ=255)                               tACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATAc                                                                                                                  <  2:455203/149‑1 (MQ=255)                                  gccgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGCTAAACCCGCTCAAACACCCTCGCAATACCCt                                                                                                               >  2:48566/1‑149 (MQ=255)                                     gcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGAc                                                                                                            <  1:492612/149‑1 (MQ=255)                                              aaTTGGGGCATGATGCCCGATGCGCCGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCCGATAAGGCGTTGACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGa                                                                                                   <  2:470276/149‑1 (MQ=39)                                                 gggggCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAACTTGGTGCCGGTTCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACACGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATac                                                                                                <  2:179793/145‑1 (MQ=37)                                                    tGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACAGGATAAGGCGTTCACGCCGCATCCGGCACGTGATTAAACCCGCTCAAACACCGTCCCAATACCCTGCCCCAGACCGATAcaca                                                                                             >  2:382105/1‑149 (MQ=37)                                                          atgCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAACCCGATACACAtcgtcg                                                                                       >  1:201816/1‑149 (MQ=255)                                                              cTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAg                                                                                   >  2:385772/1‑149 (MQ=255)                                                              cTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAg                                                                                   >  2:223408/1‑149 (MQ=255)                                                                     gACTCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAAc                                                                            <  1:441061/149‑1 (MQ=255)                                                                         cTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGaa                                                                        <  2:360731/149‑1 (MQ=255)                                                                                gTCTTATCAGGCCTACATTGGTGCCGCATCGGCATATCTGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCttt                                                                 <  1:463931/149‑1 (MQ=255)                                                                                 tCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTg                                                                >  1:444426/1‑149 (MQ=255)                                                                                               cATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGAtt                                                  >  1:450872/1‑149 (MQ=255)                                                                                                 ttGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTca                                                <  1:385772/149‑1 (MQ=255)                                                                                                 ttGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTca                                                <  2:342663/149‑1 (MQ=255)                                                                                                         cgATCGGTAGCCCGGATAAGGCGTTCACGCCCCATCCGGCAAGGGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCgtg                                        <  1:376212/148‑1 (MQ=255)                                                                                                          gATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTGAAACCCGCTCAAACACCGTCACAATACCCTGACCCAGACCGAAACACATCGACGCCAGCCAAAACTGAACGTCTTTGCGCTCCATCAGAATCACCAACgtgg                                       >  2:166956/1‑149 (MQ=38)                                                                                                            tCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCgtggtg                                     <  2:143411/149‑1 (MQ=255)                                                                                                            ccgatAGACCGGATAAGGCGTTCACGCTACACCCCGCAATTCGGTAAACCCGCCCAAACACACTCGCAATCCTCTGGCCGAGACCGATACATAGTGTCGCGAGACTGATCTGTTCCTCTTCTCGTTCCATCCGATTCTGCAGCgtgagc                                     <  2:441376/145‑4 (MQ=255)                                                                                                              ggTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCCTCAGATTCAGCAGCGGGGTGCt                                   >  2:215593/1‑149 (MQ=255)                                                                                                              ggTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCt                                   <  1:274881/149‑1 (MQ=255)                                                                                                              ggTAGACCGGATAAGGCGTTAACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGTCCCAATCCGTGACACTTCTTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCt                                   <  1:243290/149‑1 (MQ=255)                                                                                                                   aCCGGATTAGGCGTTCACGCCGCAGCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATAc                              <  1:166518/149‑1 (MQ=255)                                                                                                                     aggagcgggCGTCGACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATAcgc                            <  2:351455/142‑1 (MQ=255)                                                                                                                       gATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATACgcgc                          >  1:50773/1‑149 (MQ=255)                                                                                                                             gCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATACGCGCACCGGa                    >  1:52688/1‑149 (MQ=255)                                                                                                                              cGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATACGCGCACCGGaa                   >  1:62010/1‑149 (MQ=255)                                                                                                                                 tCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAAACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCCGATTCAGCAGCGTGATGCTGATCCGCGCACCGGaacaa                >  2:454525/1‑149 (MQ=255)                                                                                                                                     gccgcATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATACGCGCACCGGAACAACCCa            >  1:291275/1‑149 (MQ=255)                                                                                                                                     gccgcATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATACGCGCACCGGAACAACCCa            >  1:290947/1‑149 (MQ=255)                                                                                                                                       cgcATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATACGCGCACCGGAACAACCCAGc          >  2:234409/1‑149 (MQ=255)                                                                                                                                         cATACGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATACGCGCACCGGAACAACCCAGCgg        <  2:52688/149‑1 (MQ=255)                                                                                                                                               gCAAGTGGTTAAACCCGCTCAGACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATACGCGCACCGGAACAACCCAGCGGATGAcc  <  2:132389/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     TAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATACGCGCACCGGAACAACCCAGCGGATGACC  >  NC_000913_3_pae_tpiA/4027459‑4027749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.