New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 377420	46 (1.630)	5 (0.190)	5/274	3.0	10.2%	noncoding (86/187 nt)	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_pae_tpiA	= 4027573	NA (NA)					noncoding (252/281 nt)	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATAC  >  NC_000913_3_pae_tpiA/4027425‑4027721                                                                                                                                                     |                                                                                                                                                     aTGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGa                                                                                                                                                      <  1:372244/149‑1 (MQ=255)     gACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCgg                                                                                                                                                  >  2:274881/1‑149 (MQ=255)      aCGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGa                                                                                                                                                 <  2:207411/149‑1 (MQ=255)          ggTCTCGTGTTATCGGGACTACAAATAGTCCGATCCGGAGGCCGGAAAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAg                                                                                                                                             <  1:161683/148‑1 (MQ=18)            tCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGGTAAGGc                                                                                                                                           >  1:132273/1‑149 (MQ=255)             cgcgctttATCGTGCCTACAAATAGGCCGAACCGTAGGCCGGATAAGGCGTTTAGGTCGACTCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGTCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCg                                                                                                                                          <  1:41290/143‑1 (MQ=18)              gcgTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGt                                                                                                                                         >  1:372616/1‑149 (MQ=255)                  cTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGCCCGGATAAGGCGTTCAc                                                                                                                                     >  1:143411/1‑149 (MQ=255)                                   tAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTg                                                                                                                    <  1:81494/149‑1 (MQ=255)                                    aGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTgg                                                                                                                   <  2:486282/149‑1 (MQ=255)                                      tCCGAACCGTAGGCCGGATAAGGCGTGTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGtt                                                                                                                 <  2:241032/149‑1 (MQ=255)                                          aaCCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAAc                                                                                                             <  1:68594/149‑1 (MQ=255)                                          aaCCGTAGGCCGGATAAGGCGTTTACGCCGCACCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAAc                                                                                                             <  2:447690/149‑1 (MQ=255)                                            ccGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAAccc                                                                                                           <  1:465131/149‑1 (MQ=255)                                                            gCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGc                                                                                           <  2:390661/149‑1 (MQ=255)                                                            gCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGc                                                                                           >  1:455203/1‑149 (MQ=255)                                                                 tACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATAc                                                                                      <  2:362103/149‑1 (MQ=255)                                                                 tACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATAc                                                                                      <  2:455203/149‑1 (MQ=255)                                                                    gccgcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGCTAAACCCGCTCAAACACCCTCGCAATACCCt                                                                                   >  2:48566/1‑149 (MQ=255)                                                                       gcATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGAc                                                                                <  1:492612/149‑1 (MQ=255)                                                                                aaTTGGGGCATGATGCCCGATGCGCCGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCCGATAAGGCGTTGACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGa                                                                       <  2:470276/149‑1 (MQ=39)                                                                                   gggggCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTAACTTGGTGCCGGTTCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACACGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATac                                                                    <  2:179793/145‑1 (MQ=37)                                                                                      tGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACAGGATAAGGCGTTCACGCCGCATCCGGCACGTGATTAAACCCGCTCAAACACCGTCCCAATACCCTGCCCCAGACCGATAcaca                                                                 >  2:382105/1‑149 (MQ=37)                                                                                            atgCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAACCCGATACACAtcgtcg                                                           >  1:201816/1‑149 (MQ=255)                                                                                                cTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAg                                                       >  2:223408/1‑149 (MQ=255)                                                                                                cTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAg                                                       >  2:385772/1‑149 (MQ=255)                                                                                                       gACTCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAAc                                                <  1:441061/149‑1 (MQ=255)                                                                                                           cTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGaa                                            <  2:360731/149‑1 (MQ=255)                                                                                                                  gTCTTATCAGGCCTACATTGGTGCCGCATCGGCATATCTGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCttt                                     <  1:463931/149‑1 (MQ=255)                                                                                                                   tCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTg                                    >  1:444426/1‑149 (MQ=255)                                                                                                                                 cATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGAtt                      >  1:450872/1‑149 (MQ=255)                                                                                                                                   ttGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTca                    <  1:385772/149‑1 (MQ=255)                                                                                                                                   ttGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTca                    <  2:342663/149‑1 (MQ=255)                                                                                                                                           cgATCGGTAGCCCGGATAAGGCGTTCACGCCCCATCCGGCAAGGGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCgtg            <  1:376212/148‑1 (MQ=255)                                                                                                                                            gATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTGAAACCCGCTCAAACACCGTCACAATACCCTGACCCAGACCGAAACACATCGACGCCAGCCAAAACTGAACGTCTTTGCGCTCCATCAGAATCACCAACgtgg           >  2:166956/1‑149 (MQ=38)                                                                                                                                              tCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCgtggtg         <  2:143411/149‑1 (MQ=255)                                                                                                                                              ccgatAGACCGGATAAGGCGTTCACGCTACACCCCGCAATTCGGTAAACCCGCCCAAACACACTCGCAATCCTCTGGCCGAGACCGATACATAGTGTCGCGAGACTGATCTGTTCCTCTTCTCGTTCCATCCGATTCTGCAGCgtgagc         <  2:441376/145‑4 (MQ=255)                                                                                                                                                ggTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCCTCAGATTCAGCAGCGGGGTGCt       >  2:215593/1‑149 (MQ=255)                                                                                                                                                ggTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCt       <  1:274881/149‑1 (MQ=255)                                                                                                                                                ggTAGACCGGATAAGGCGTTAACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGTCCCAATCCGTGACACTTCTTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCt       <  1:243290/149‑1 (MQ=255)                                                                                                                                                     aCCGGATTAGGCGTTCACGCCGCAGCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATAc  <  1:166518/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAAGTGGTTAAACCCGCTCAAACACCGTCGCAATACCCTGACCCAGACCGATACACATCGTCGCCAGACCAAACTGAACGTCTTTGCGTTCCATCAGATTCAGCAGCGTGGTGCTGATAC  >  NC_000913_3_pae_tpiA/4027425‑4027721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.