| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1978503 = | NA (NA) | 29 (1.030) | 24/286 | 0.3 | 96.7% | intergenic (‑306/+15) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913_3_pae_tpiA | = 2490627 | 1 (0.040) | coding (1324/1695 nt) | oxc | oxalyl CoA decarboxylase, ThDP‑dependent | |||||
TGCACCAGCGCCACTGAGATCAACACCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCA > NC_000913_3_pae_tpiA/2490481‑2490766 | tgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACaa > 1:172943‑M2/138‑149 (MQ=255) gcgcCACTGAGATCAACACCGGCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgac > 1:250324‑M2/1‑140 (MQ=255) gcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAAc > 1:462995‑M2/129‑149 (MQ=255) gcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAAc < 2:462995‑M2/21‑1 (MQ=255) aCTGAGACCAACACCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCACCCCTCTGAAACCAATAGCACTTTCACCTTCAATGGCGCCggtactgactccaa > 1:298281‑M2/1‑135 (MQ=255) gcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGaa < 2:380224‑M2/26‑1 (MQ=255) aTCAACCCCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttatt > 1:371786‑M2/1‑129 (MQ=255) gcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaccagcatcatacactaaatcagtaagttggcagcatcacCAATGGCTACAACCGGAGAACCAGAAGTCACGCTCGCTcc > 2:400055‑M2/110‑149 (MQ=255) tcctcTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACAAAAAGCACTATCACCTTCAATAGCGACggtaatgaccccaacttattgatactgtttta < 2:325053‑M2/149‑33 (MQ=255) cctcTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACGGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttat > 2:294299‑M2/1‑116 (MQ=255) ctctGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatg < 1:181464‑M2/149‑35 (MQ=255) accccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATgg > 1:462955‑M2/105‑149 (MQ=255) aGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcaga > 2:435610‑M2/1‑109 (MQ=255) agctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATa < 2:172943‑M2/56‑1 (MQ=255) aaggagggacagttgatagtaacagaggccactggagcacctcaaaaacactatcattcactaaatcagtaagttggcagcagcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGc < 2:400756‑M2/63‑1 (MQ=255) aaaaaTAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCGATGCAGAGttttatgactccaacttattgatagtgttttctgttcagataatgcccgatgactt < 1:241621‑M2/149‑57 (MQ=255) aaaTAACGATCGTCACCGGCAGGTGATATCGACAAATCGATTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaagaaatacgacttagtgaaagtgttttttgttcagataatgcccgatgactttg < 2:104438‑M2/149‑59 (MQ=255) cgacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGa < 1:65186‑M2/69‑1 (MQ=255) tgatagaaacagaatccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCa < 1:322300‑M2/76‑1 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCa < 2:330981‑M2/76‑1 (MQ=255) aTCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcag > 1:162008‑M2/1‑83 (MQ=255) gTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcggctc < 1:453690‑M2/149‑70 (MQ=255) aacagaagccactggcgcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTCGCCCCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACca < 1:401360‑M2/83‑1 (MQ=255) cGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccg < 1:479662‑M2/149‑75 (MQ=255) aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATc < 1:162265‑M2/88‑1 (MQ=255) ttATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga > 2:181464‑M2/1‑68 (MQ=255) ttATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt < 1:273871‑M2/147‑80 (MQ=255) ttATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatttt > 2:273871‑M2/1‑68 (MQ=255) ttATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACgg > 2:136072‑M2/1‑68 (MQ=255) ttATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACgg < 1:136072‑M2/70‑3 (MQ=255) ttATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTAAATGGCGACggtaatgactccaacttattgttagtgttttatgttcagataatgcccgatgactttgtcatgtagctccaccgattttga < 1:190897‑M2/149‑82 (MQ=255) ttATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTAAATGGCGACggtaatgactccaacttattgatagtgttttgtgttcagataatgcccgatgactttgacatgcagcaccaccgattttga < 1:94699‑M2/149‑82 (MQ=255) cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATCCCCATGACACTCCAGGTACCACAATCCAga < 1:269545‑M2/92‑1 (MQ=255) actggggccccgcaaaaacaccaccatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAgac < 2:202149‑M2/93‑1 (MQ=255) actggagcacctcaaaaacacgatcatacactagatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGCAACGACTGTACCTTTGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAgac > 1:365482‑M2/57‑149 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAgac < 1:385804‑M2/93‑1 (MQ=255) gTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt > 2:241621‑M2/1‑53 (MQ=255) tttCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacgtc < 1:214130‑M2/149‑98 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTta < 1:355901‑M2/107‑1 (MQ=255) aacaccatcatacactaaatcagtaatttgtcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTtata < 1:9705‑M2/109‑1 (MQ=255) aaTTTCCATCCCAATGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtc > 2:397756‑M2/1‑48 (MQ=255) catcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCa > 2:413399‑M2/36‑125 (MQ=255) catcatacactaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCa < 1:413399‑M2/90‑1 (MQ=255) accatacacgacatcagtaagtcgccatcatcacCAATGGCGAAATCCGGAGAATCTGAAGTCACGCTAGAACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGATGACGTGGTTTCTACATATc < 2:420509‑M2/115‑1 (MQ=255) cagaccctaaagcagaaagttggcagcatgagCACTGTCGACAACCGCAGAACCAGAAGTCACGGTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCaa < 2:496397‑M2/117‑1 (MQ=255) aTCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgcttttgagaacgacagcgacttccgtcccagccg < 1:59299‑M2/149‑109 (MQ=255) actaaatcagtaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCGTAGCCCATACCGATGCCCATTACACCCCAGGTACCACAATCCAGACGACGACGGGGTTTATACATAAcaataatt > 2:69682‑M2/28‑148 (MQ=255) caggaagttggcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTg < 1:392943‑M2/129‑1 (MQ=255) ccAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc < 2:8727‑M2/93‑65 (MQ=255) ccAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc < 2:8791‑M2/93‑65 (MQ=255) ccAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 1:8791‑M2/1‑29 (MQ=255) ccAAAAGCACTATCACCTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgc > 1:8727‑M2/1‑29 (MQ=255) gcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCa < 2:329964‑M2/66‑1 (MQ=255) gcagcatcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCa > 1:329964‑M2/11‑76 (MQ=255) catcacCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTa < 1:69682‑M2/143‑1 (MQ=255) cACCTTCAATGGCGACggtaatgcctccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg > 1:46830‑M2/1‑16 (MQ=255) cTTCAATGGCGACggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgccttccgtcccagccgtgccaggtgctgcctcagattcagatta < 2:20814‑M2/149‑137 (MQ=255) cataggCGACAACCGGAGAACCAGAATTCACGCTAGCAACGATGGCATAGCTCATACCGATGCCCATGACTCCCCAGGTACCACAATCTAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCa < 2:197142/145‑1 (MQ=255) | TGCACCAGCGCCACTGAGATCAACACCGTCTCCTCTGTAGATGCCGCCATTATTAAAAATAACGATCGTCACCGGCAGGTTATATCGACAAATCGTTTCAATTTCCATCCCACTGAAACCAAAAGCACTATCACCTTCAATGGCGACAACCGGAGAACCAGAAGTCACGCTAGCACCGATGGCATAGCCCATACCGATGCCCATGACACCCCAGGTACCACAATCCAGACGACGACGTGGTTTATACATATCAATAATATTTCGTGCATTATCCAGGGTATTTGCA > NC_000913_3_pae_tpiA/2490481‑2490766 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |