New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2304842 =	NA (NA)	4 (0.150)	4/272	3.4	NA	noncoding (426/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_pae_tpiA	= 2431012	NA (NA)					noncoding (84/84 nt)	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

AAAATATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGT  >  NC_000913_3_pae_tpiA/2430876‑2431156                                                                                                                                         |                                                                                                                                                 aaaaTATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTa                                                                                                                                      >  1:389337/1‑149 (MQ=255)   aaTATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAAt                                                                                                                                    <  2:389337/149‑1 (MQ=255)      atTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTGCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCg                                                                                                                                 >  1:442829/1‑149 (MQ=255)                        ttgaTGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCa                                                                                                               <  2:187487/146‑1 (MQ=255)                           aTGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGCCCTACGGTTCTACCCCTGCCTAGGCCTGATAACACACGCCAGCGTCGCATCAGGCAAGACCGTCTTAATTCCGCGTCTACCCCATTAcccagc                                                                                                            >  2:343856/1‑145 (MQ=37)                                tttGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTCGGCCTTATACGACGCGCCACCGTCGCATCAAGCCAGACCGTATTACTTCCGCGCATAGCCCATTACCCCCCCACtt                                                                                                       >  2:145145/1‑149 (MQ=37)                                  tGCGGCACCGGGCAATGCGTCTCGGATGCTGCGTAACCGCCTTATCCGACCTACGTGTCTACCCCTGCGTAGGCCTGATAAGACTCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTaa                                                                                                     <  1:115195/149‑1 (MQ=39)                                    ggggaTCGGGGAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGc                                                                                                   <  2:123812/145‑1 (MQ=255)                                          cGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGaaa                                                                                             <  1:450319/149‑1 (MQ=255)                                              cAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTg                                                                                         <  2:442829/149‑1 (MQ=255)                                               taTGCGTGTCGGATGAGGGGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGc                                                                                        <  2:308429/148‑1 (MQ=255)                                                 tGCGTGTCGGATCCCGCGTAACCGCCTTAACCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCtt                                                                                      <  1:19073/149‑1 (MQ=255)                                                            tGCAGCATAAACGCCTTATCCGCCCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCTCCCa                                                                           <  1:354473/149‑1 (MQ=255)                                                                        gCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCa                                                               >  1:361660/1‑149 (MQ=255)                                                                        gCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCa                                                               >  1:132090/1‑149 (MQ=255)                                                                         ccTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAg                                                              >  2:199661/1‑149 (MQ=255)                                                                            tATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCtt                                                           <  2:283858/149‑1 (MQ=255)                                                                             aTCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACg                                                                                                             >  2:58818/1‑98 (MQ=255)                                                                             aTCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACg                                                                                                             <  1:58818/98‑1 (MQ=255)                                                                              tCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTAt                                                         <  1:374338/149‑1 (MQ=255)                                                                               cccaCCTACGGTTGTCCCCCCGCGTAGGTCTTATACGACGCGCCAGGGTTACATCAGTCCCGCCCTTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATc                                                        <  1:316844/146‑1 (MQ=255)                                                                                   ccTACGGTTCCAGCCCTGGTTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTc                                                    <  2:150699/149‑1 (MQ=255)                                                                                             tACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCg                                          >  1:62441/1‑149 (MQ=255)                                                                                               ccccTGCGTAGGCCTGATAAGACGCACCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGc                                        <  1:213442/149‑1 (MQ=255)                                                                                                   tGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCaa                                    <  1:199661/149‑1 (MQ=255)                                                                                                             ggATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACg                          <  2:264465/148‑1 (MQ=255)                                                                                                                    aCGCGGCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAAtt                   <  2:228244/149‑1 (MQ=255)                                                                                                                          cAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCCTCCGGCCCAACCAGAATACGGGTAATTTTAccc             >  1:494867/1‑149 (MQ=255)                                                                                                                               tCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCa                                                                                                          >  1:90944/1‑51 (MQ=255)                                                                                                                               tCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCa                                                                                                          <  2:90944/51‑1 (MQ=255)                                                                                                                               tCGCATCAGGAAAGACGGTATTAATTCGGCGTATACCCCAATACAACGCAACTTAAGCCAAAAAGTTGCGTCAACTCACCCAGCAAACCTTTCAGCTTATCTTTCGAGACATCCGGCCCAACCCTAATCCCGGTACTTTTACCCCGccc        >  2:90346/1‑147 (MQ=255)                                                                                                                                     cAGGCAAGACCGGATGAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTCTGCCGGCACTGGCGt  <  2:309785/149‑1 (MQ=255)                                                                                                                                         |                                                                                                                                                 AAAATATTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCAAGACCGTATTAATTCGGCGTATAGCCCATTACCACGCCACTTAAGCCAGAAAGTTGCTTCAACTCACCCAGCGAACCTTTCAGCTTATCTTTCGAGGCATCCGGCCCAACCAGAATACGGGTAATTTTACCCTGCACTGGCGT  >  NC_000913_3_pae_tpiA/2430876‑2431156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.