| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 948822 = | 36 (0.690) | 4 (0.080) | 4/258 | NT | 10.8% | coding (747/909 nt) | ycaN | LysR family putative transcriptional regulator |
| ? | NC_000913_3_pae_tpiA | 948840 = | 32 (0.650) | coding (729/909 nt) | ycaN | LysR family putative transcriptional regulator | |||||
ACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAA > NC_000913_3_pae_tpiA/948696‑948988 | aCCCGTTTTTACCTAATCGAGGAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGtt < 1:544767/149‑1 (MQ=255) gcGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCa < 1:781907/148‑1 (MQ=255) ccGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCa > 2:279216/1‑149 (MQ=255) gTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATa < 1:287843/149‑1 (MQ=255) tttttACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATag > 2:377654/1‑149 (MQ=255) tttACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATagag > 2:42956/1‑149 (MQ=255) ttACATAATCGATAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGc < 1:600149/149‑1 (MQ=255) tAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATa > 2:835866/1‑149 (MQ=255) tCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATAccc > 2:910236/1‑149 (MQ=255) gagaAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGa > 1:398158/1‑149 (MQ=255) tGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAg < 1:836107/149‑1 (MQ=255) gcgcAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATGAAGCAAACAACCGATACCAgaat > 1:348639/1‑146 (MQ=255) gCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCaaaa < 2:632142/149‑1 (MQ=255) atatACTGGCGGTTTGGATAATAGCTCTGGCAGCCTGGACGCTCTGTGCTCCCTTCTTCCAGTACACGTTCTAAACGAGCAGTATCAAGGGACGCTTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTc < 2:226493/149‑1 (MQ=255) atatACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAGGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTc < 1:671691/149‑1 (MQ=255) atatACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTc < 2:134140/149‑1 (MQ=255) ataCTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCa < 1:449832/149‑1 (MQ=255) cattctggatgatgttgatgctgaactggaggccgttttgatgggtgctggtatcgggtatctgctctatgaacagATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATAccc > 1:337187‑M1/77‑115 (MQ=255) cattctggatgatgttgatgctgaactggaggccgttttgatgggtgctggtatcgggtatctgctctatgaacagATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATAccc < 2:337187‑M1/39‑1 (MQ=255) aTCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAg > 2:453876/1‑149 (MQ=255) tgctgaactggaggccgttttgatgggtgctggtatcgggtatctgctctatgaacagATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATAc < 1:116609‑M1/44‑1 (MQ=255) tgctgaactggaggccgttttgatgggtgctggtatcgggtatctgctctatgaacagATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATAc > 2:116609‑M1/59‑102 (MQ=255) gAAGCCTGGACGCTCTGTGCTTCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATATGTTCATAGAGCAGATACGCGATAGTAGCAGCGCTCAAAAGGGCCTCCAGTTCGGCATCCACATGATCCTGAGTGa > 2:150037/1‑149 (MQ=255) aaGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGat < 1:151514/149‑1 (MQ=255) aCGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTg < 1:178054/149‑1 (MQ=255) cGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGc < 2:163927/149‑1 (MQ=255) tgtgCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGCTACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGAcca > 2:483405/1‑147 (MQ=255) aGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCAAGAATGACATTTATTTGGACAGCAGttttc > 2:881859/1‑147 (MQ=255) gtatcgggtatctgctctatgaacagatcaaggagtaccttgatCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCa < 1:116609‑M2/58‑1 (MQ=255) gtatcgggtatctgctctatgaacagatcaaggagtaccttgatCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCa > 2:116609‑M2/45‑102 (MQ=255) ccATTACTCATGCTAAACGACTAGTATCACGGTACTCCTTGATCTGTTCATAGCGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTcc < 2:914156/149‑1 (MQ=255) gggtatctgctctatgaacagatcaaggagtaccttgatCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATg < 2:337187‑M2/76‑1 (MQ=255) gggtatctgctctatgaacagatcaaggagtaccttgatCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATg > 1:337187‑M2/40‑115 (MQ=255) acacATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTGCAGTTCAGCATCAATAGCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGc > 2:897381/1‑149 (MQ=255) acacAGTCTAAACGACCAGGATCAAGGCACTCCTTGATCTGTTCATAGAGCAGACACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGc < 2:698602/149‑1 (MQ=255) aaCGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAg < 2:19492/149‑1 (MQ=255) aCGACCAGTATCAAGGTACTCCTTGATCGGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGt < 1:51411/149‑1 (MQ=255) aCCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGa > 1:418507/1‑149 (MQ=255) cAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGaaa > 1:702589/1‑149 (MQ=255) tATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGACTGATATTTCCTGCGCCCGCAATTTCCAGCTCCTTTGCAAATTGCCACTGGAAAGGt > 2:471937/1‑149 (MQ=255) tATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACACGATACCAGCACCCATCAAATGGGCCTCCAGTTCAGCATCAACATCATCGAGAATGATATTTACTGCGAAAGCAATTTCCATCTCCTTTCCAAAATACGAGTAGAAAgat > 2:73904/1‑147 (MQ=255) CAAGGTACTCCTGGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTg > 1:279216‑M1/1‑149 (MQ=255) AAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATGAACACGGCCTCCAGTTCAGCATCAACATCATCAAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCAAGTGGAACGGTTTGc < 2:127156‑M1/149‑1 (MQ=255) aCTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTg < 1:192147/149‑1 (MQ=255) cTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTgg < 1:595994/149‑1 (MQ=255) cTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCACCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTgg > 1:613207/1‑149 (MQ=255) cttgatCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTACAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGAt > 1:517313‑M2/7‑149 (MQ=255) tgatCTGTTCATAGAGCAGATAGCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATaa < 2:691087‑M2/145‑1 (MQ=255) cTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGaa < 2:398158/149‑1 (MQ=255) | ACCCGTTTTTACATAATCGAGAAATGCGCGCAAGCCGCAGGACATATACTGGCGGTTTGGATAATAGATCTGGAAGCCTGGACGCTCTGTGCTCCAGTCTTCCAGTACACATTCTAAACGACCAGTATCAAGGTACTCCTTGATCTGTTCATAGAGCAGATACCCGATACCAGCACCCATCAAAACGGCCTCCAGTTCAGCATCAACATCATCCAGAATGATATTTCCTGCGACAGCAATTTCCAGCTCCTTTGCAAATTGCCAGTGGAAAGGTTTGCCGCTGGGATAACGAA > NC_000913_3_pae_tpiA/948696‑948988 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |