Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913_3_pae_tpiA | 2,172,505 | A→T | 6.2% | V123V (GTT→GTA) | gatD ← | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913_3_pae_tpiA | 2,172,505 | 0 | A | T | 6.2% | 162.4 / 2.2 | 61 | V123V (GTT→GTA) | gatD | galactitol‑1‑phosphate dehydrogenase, Zn‑dependent and NAD(P)‑binding |
Reads supporting (aligned to +/- strand): ref base A (21/34); new base T (2/2); total (25/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.39e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 |
CAATGGTTCCGGCACCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGCACACAGGCAACCGCATCGCCAGGGTGTAAAT > NC_000913_3_pae_tpiA/2172357‑2172653 | cAATGGTTCCGGCACCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTa > 1:333704/1‑149 (MQ=255) gTTCCGGCACAAATAATAATATCGTTTTTATTCTCACGACCTTGCGCTAAATGAAAAGCATGTAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTAACTAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGAc < 2:247075/149‑1 (MQ=255) ccGGCACCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAat < 2:905081/149‑1 (MQ=255) aCCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCAGTGGGTAAAGCAAAGACATTTTTTCGCTTAACGACAATATAtt > 2:466719/1‑149 (MQ=255) cAATAATAATAACTGTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCa < 2:592899/149‑1 (MQ=255) cAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCa < 1:622626/149‑1 (MQ=255) cAATAATAATAACGTTTTTATTCTCACAACCATACGCTAAATAAAAACCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCa < 2:748963/149‑1 (MQ=255) aataataatAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGCCAATATCTTCAg > 1:352443/1‑149 (MQ=255) aataataatAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAg < 1:831087/149‑1 (MQ=255) tcACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGa > 2:143672/1‑149 (MQ=255) aaCCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCa > 2:577179/1‑149 (MQ=255) gcgcCAAATGAAAAGCATGCATACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATaaaa < 1:365865/149‑1 (MQ=255) cTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCa > 1:759992/1‑149 (MQ=255) aaaaGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTg < 1:360115/149‑1 (MQ=255) aacgCATGCAGGCCAACGGTAATCGGCTCAATAAACGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTgc < 1:115294/146‑1 (MQ=255) aaGCATGCAGACCAACGATAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTgcg < 1:698609/149‑1 (MQ=255) tGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCAcgccgc > 2:38583/1‑120 (MQ=255) tGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCAcgccgc < 1:38583/120‑1 (MQ=255) tGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTg > 2:933163/1‑149 (MQ=255) tGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTg > 1:143112/1‑149 (MQ=255) aCGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGCCATTTTCTCGCTTAACGACAATATATTCAGCAGATCCACCATCATGCCGCGAGCCAATAAAGTCATATTTTGCGCAATGGGAATaaaa < 1:538695/149‑1 (MQ=255) gTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAAccc < 2:95758/149‑1 (MQ=255) aTCGGCTCAATAAAAGCCCCATCCTCAATAGGAATATCCGTGGGTAGAGCAAAGACATTTTTTCACTTAACGACAATATATTCAGCAAATCCACCATCACGCAGCGAGCCTATAAAATCATATATTGCGCACTGGGAATACTACCGttt > 2:382114/1‑149 (MQ=255) aTCCGCTCAATAAAGGCCCCATCCTCCAGAGGCATATCCGTAGGTAGATCAAAGACATTTTTTCGCTAAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCttt < 2:214655/149‑1 (MQ=255) ttggCTCAATAAAAGCCCCATCCCGAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTc < 1:496245/147‑1 (MQ=255) tCGGCTGAATAAAAGCCCCATCTTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTc < 2:534215/149‑1 (MQ=255) tCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCCCGAGCCAATAAAATCACATTTCGCGCACCAGAAATAAAACCCTTTc > 1:90087/1‑149 (MQ=255) gCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGa > 1:843802/1‑149 (MQ=255) gCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGa > 1:386744/1‑149 (MQ=255) aaTAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACAct > 2:123908/1‑149 (MQ=255) aTAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCAAGAACCAAGAAACTCATATTTTGCACCCTTTGAATAAAACCCTTTCAGACActc > 1:824102/1‑149 (MQ=255) tAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACActct < 2:69981/149‑1 (MQ=255) acaaGCCCCATCCTCAATACGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAATGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCCATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTg < 1:120768/147‑1 (MQ=255) cATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTCCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTa > 2:565215/1‑149 (MQ=255) tCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGACGCGAGCCAATAAAATCATATTTTGCGCACTGGGATTAAGATACTTTCACATAATCTGGACAAGTact > 2:877588/1‑147 (MQ=255) ccTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTaaaa < 1:697884/149‑1 (MQ=255) cTCAATCGTCATATCCGTGGGTAGATCAAAGACATTTTTTCGCTTAGCGATAATATATGCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGCGTCGGCAAGGCGTGCAGACACTCTTGACAAGTAAAAc < 2:445869/149‑1 (MQ=255) tCAATAGGCATATCCGTGGGTAGAGCAATGACCTTTTTTCTGTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACa < 1:636153/149‑1 (MQ=255) aaTAGGCCTATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAgg < 1:394079/149‑1 (MQ=255) aaTAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAATGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTAAGACAATCTGGACAAATaaaaaaag > 2:713465/1‑145 (MQ=255) aaTAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAgg > 1:34144/1‑149 (MQ=255) gCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGtaat < 2:590053/149‑1 (MQ=255) cGTGGGAAGAGGTAAGACATTTTTCCGCGTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGca < 2:334047/149‑1 (MQ=255) tGGGTAGAGCAAAGACATTTTTTCGTTTTATTACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGcaca > 2:342887/1‑149 (MQ=255) tGGGTAGAGCAAAGACATTTTTTCGCTTTACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGcaca > 2:342903/1‑149 (MQ=255) tGGGTAGAGCAAAGACATTTTTTCGCTTTACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGcaca < 1:342903/149‑1 (MQ=255) tGGGTAGAGCAAAGACATTTTTTCGCTTTACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGcaca < 1:342887/149‑1 (MQ=255) tGGGTAGAGCAAAGACATTTTTTCGCTTGACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTACAACAGGGTAATAACGGcaca > 2:86171/1‑149 (MQ=255) gggTAGAGCAAAGACATTTTTTCGCTTCACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGcacac > 2:66224/1‑149 (MQ=255) gTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATATAACCCCTTCAGCAATTCTCGACCAGTAGAACAGTTTAATTACGGctcacgg < 2:326502/149‑3 (MQ=255) tcAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGTCAATAAAATCATATTTTGCGTACTGGGAATAAAACCCTTTCAGACACTCTAGACAAGTAAAACAGTGTAATAACGGCACACAGGCAAc < 2:115196/148‑1 (MQ=255) aGACATTTCGTCGATCAACGACAATATAGTCAGCAAATCCACGATCACGCCGCTATCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGCACACAGGCAACCGCa < 2:425397/149‑1 (MQ=255) gACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGCACACAGGCAACCGCAt > 1:97063/1‑149 (MQ=255) aCATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTAGACAAATAAAACAAAGTAATAACGGCACACAGACAACCGCATc < 2:208255/149‑1 (MQ=255) aTTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCGAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGCACACAGGCAACCGCATCGc > 1:182289/1‑149 (MQ=255) aTTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGcac < 2:792873/132‑1 (MQ=255) aTTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGcac > 1:792873/1‑132 (MQ=255) ttttCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGCACACAGGCAACCGCATCGCCAg < 2:759992/149‑1 (MQ=255) tttCGCTTAACGACAATTTATTCAGCAAATCCACCATCACGCCGCTAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGCACACAGGCAACCGCATCGCCAgg < 2:790484/149‑1 (MQ=255) ttcctttAACCACAATATATTCACCAAATCCACCATCCCGCCGCGAGCCAATAAAATCATATTTTGCTCACTGGTAATAAAACCCTTTCAGACACGCTGGACAAGTAAAACAGGGTAATAACGGCACACAGGCAACCGCATCGCCAggg < 1:197374/144‑1 (MQ=255) tCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGCACACAGGCAACCGCATCGCCAGGgt < 2:668879/149‑1 (MQ=255) ttACCGACAATATATGCAGCAAATCCAGCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGCACACAGGCAACCGCATCGCCAGGGTGTaa < 2:35025/149‑1 (MQ=255) aaCGACAATATACTCAGCAAATCCACCATCACGCCGCGAGCCAATACAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAACCAGGGTAATAACGGCACACAGGCAACCGCATCGCCAGGGTGTAAat < 1:467049/149‑1 (MQ=255) | CAATGGTTCCGGCACCAATAATAATAACGTTTTTATTCTCACAACCTTGCGCTAAATGAAAAGCATGCAGACCAACGGTAATCGGCTCAATAAAAGCCCCATCCTCAATAGGCATATCCGTGGGTAGAGCAAAGACATTTTTTCGCTTAACGACAATATATTCAGCAAATCCACCATCACGCCGCGAGCCAATAAAATCATATTTTGCGCACTGGGAATAAAACCCTTTCAGACACTCTGGACAAGTAAAACAGGGTAATAACGGCACACAGGCAACCGCATCGCCAGGGTGTAAAT > NC_000913_3_pae_tpiA/2172357‑2172653 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |