New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1552249 =	NA (NA)	39 (0.310)	30/220	7.5	NA	noncoding (1/97 nt)	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_pae_tpiA	1552279 =	NA (NA)					noncoding (31/97 nt)	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

CAATAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCatga‑‑a‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/1552403‑1552249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGCGACACAT  >  NC_000913_3_pae_tpiA/1552279‑1552432                                                                                                                                                                                                                                                                                                                         CAATAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCAT                                                                                                                                                                   >  1:1513024/1‑150  AATAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATC                                                                                                                                                                  >  4:1035790/1‑150    TAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCG                                                                                                                                                                >  4:592575/1‑150     AAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGG                                                                                                                                                               <  1:1010573/150‑1      AAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTACTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGC                                                                                                                                                              >  1:944660/1‑150       AAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCA                                                                                                                                                             <  2:1700213/150‑1        AAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                            <  4:565356/150‑1        AAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                            <  2:1513024/150‑1                ACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                            <  1:412328/142‑1                ACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                            >  2:412328/1‑142                             CCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA                                                                                                                                                          >  4:995511/1‑131                             CCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA                                                                                                                                                          <  3:995511/131‑1                                  TAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAATGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATG                                                                                                                                                           <  1:1535287/125‑1                                  TAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAATGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATG                                                                                                                                                           >  2:1535287/1‑125                                         GATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCG                                                                                                                                                                >  2:374356/1‑113                                         GATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCG                                                                                                                                                                <  1:374356/113‑1                                               AAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATG                                                                                                                                                           <  2:1534306/112‑1                                               AAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATG                                                                                                                                                           >  1:1534306/1‑112                                                  CGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCAT                                                                                                                                                                   >  4:45815/1‑101                                                  CGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCAT                                                                                                                                                                   <  3:45815/101‑1                                                               GATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AA                                                                                                                                                      <  2:322922/99‑1                                                               GATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AA                                                                                                                                                      >  1:322922/1‑99                                                                      TACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑A                                                                                                                                                       >  1:1550773/1‑91                                                                      TACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑A                                                                                                                                                       <  2:1550773/91‑1                                                                         GCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTC                                                                                                                                               >  1:795670/1‑96                                                                         GCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTC                                                                                                                                               <  2:795670/96‑1                                                                              TCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATG                                                                                                                                                           >  2:1728841/1‑81                                                                              TCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATG                                                                                                                                                           <  1:1728841/81‑1                                                                               CAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTT                                                                                   >  2:550754/1‑150                                                                                    CTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTT                                                                              >  2:1168012/1‑150                                                                                        ACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTC                                                                          <  1:550754/150‑1                                                                                          GTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA                                                                                                                                                          >  1:878987/1‑70                                                                                          GTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA                                                                                                                                                          <  2:878987/70‑1                                                                                               CTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTT                                                                   <  1:1168012/150‑1                                                                                                TGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTG                                                                                                                                >  1:1420233/1‑88                                                                                                TGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTG                                                                                                                                <  2:1420233/88‑1                                                                                                    ATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                            <  1:34366/58‑1                                                                                                    ATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCAT                                                                                                                                                            >  2:34366/1‑58                                                                                                                  AAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCCTTCAAATCCAATAGATTGCAGTGAA                                                                                                                         >  2:230425/1‑79                                                                                                                  AAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCCTTCAAATCCAATAGATTGCAGTGAA                                                                                                                         <  1:230425/79‑1                                                                                                                  AAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAA                                                 <  1:986454/149‑1                                                                                                                  AAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAA                                                 >  2:986454/1‑149                                                                                                                    GGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑ACACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGC                                                                                                                <  2:394511/84‑1                                                                                                                    GGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑ACACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGC                                                                                                                >  1:394511/1‑84                                                                                                                    GGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGT                                              >  3:772433/1‑150                                                                                                                    GGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGT                                              >  2:1287788/1‑150                                                                                                                        TTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCA                                          <  1:1287788/150‑1                                                                                                                            ATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGT                                                                               <  2:222546/109‑1                                                                                                                            ATGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGT                                                                               >  1:222546/1‑109                                                                                                                             TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑ACACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCCGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCGTTATAAAGTGCCATTTTT                                     >  3:558538/1‑150                                                                                                                             TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑ACACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAG                                                                                                   <  2:1386582/88‑1                                                                                                                             TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑ACACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAG                                                                                                   >  1:1386582/1‑88                                                                                                                             TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT                                     >  1:846671/1‑150                                                                                                                             TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTT                                     >  3:784629/1‑150                                                                                                                             TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTT                                                                             <  2:144373/110‑1                                                                                                                             TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTT                                                                             >  1:144373/1‑110                                                                                                                             TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCA                                                                                                                                        >  2:1399706/1‑51                                                                                                                             TGCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCA                                                                                                                                        <  1:1399706/51‑1                                                                                                                              GCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATC                                                                       <  4:678093/115‑1                                                                                                                              GCCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATC                                                                       >  3:678093/1‑115                                                                                                                               CCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTT                                   >  3:86452/1‑150                                                                                                                               CCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCA                                                                                            >  1:101917/1‑93                                                                                                                               CCGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCA                                                                                            <  2:101917/93‑1                                                                                                                                CGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTA                                                                                                    >  3:640210/1‑84                                                                                                                                CGGATAAGGCGTTCACGCCGCATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTA                                                                                                    <  4:640210/84‑1                                                                                                                                          GTTGACGCCGCATCCGGCATGA‑‑ACTCCCTGCAAACCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCGTCAGGCAATGTTGCGTTTGTTATCCGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTGATTGCGTACCC                        <  4:558538/150‑1                                                                                                                                                    CATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTA              <  4:772433/150‑1                                                                                                                                                     ATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGC                                                                                                  >  3:672112/1‑65                                                                                                                                                     ATCCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGC                                                                                                  <  4:672112/65‑1                                                                                                                                                       CCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATC           >  3:281209/1‑150                                                                                                                                                       CCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGT                                                                                                                    <  1:855955/45‑1                                                                                                                                                       CCGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGT                                                                                                                    >  2:855955/1‑45                                                                                                                                                        CGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCG          >  1:389445/1‑150                                                                                                                                                        CGGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATAGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCG          >  2:1449337/1‑150                                                                                                                                                         GGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGC         <  4:706780/150‑1                                                                                                                                                         GGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGC         >  1:498044/1‑150                                                                                                                                                         GGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGG                                                                                          >  3:977319/1‑69                                                                                                                                                         GGCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGG                                                                                          <  4:977319/69‑1                                                                                                                                                          GCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTT                                                                   >  3:83358/1‑91                                                                                                                                                          GCATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTT                                                                   <  4:83358/91‑1                                                                                                                                                           CATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGCGA       <  3:495318/150‑1                                                                                                                                                            ATGA‑‑ACACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGCGAC      <  2:458397/150‑1                                                                                                                                                            ATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGCGAC      >  4:539480/1‑150                                                                                                                                                            ATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTG                                                                                                             >  3:832577/1‑47                                                                                                                                                            ATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTG                                                                                                             <  4:832577/47‑1                                                                                                                                                              GA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTG                                                                                                                     <  2:814190/37‑1                                                                                                                                                              GA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTG                                                                                                                     >  1:814190/1‑37                                                                                                                                                                  AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGCGACACAT  >  1:1126957/1‑150                                                                                                                                                                  AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAG                                                                                                                  >  3:932335/1‑38                                                                                                                                                                  AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAG                                                                                                                  <  4:932335/38‑1                                                                                                                                                                                                                                                                                                                         CAATAAAAAAATGGCACTTTATAAAGCGCCATTTAGAACTGATGACAAACGCAACATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTTCACTGCAATCTATTGGATTTGAAGGGTTTTCATGCCGGATAAGGCGTTCACGCCGCATCCGGCatga‑‑a‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/1552403‑1552249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcATGA‑‑AAACCCTTCAAATCCAATAGATTGCAGTGAACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATGTTGCGTTTGTCATCAGTTCTAAATGGCGCTTTATAAAGTGCCATTTTTTTATTGCGTAACCAGACGGCGTAATCGCGACACAT  >  NC_000913_3_pae_tpiA/1552279‑1552432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.