New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3305605 =	21 (0.730)	4 (0.150)	4/272	3.6	15.4%	coding (213/1245 nt)	mtr	tryptophan transporter of high affinity
	?	NC_000913_3_pae_tpiA	3305636 =	24 (0.880)					coding (182/1245 nt)	mtr	tryptophan transporter of high affinity
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGA  >  NC_000913_3_pae_tpiA/3305511‑3305784                                                                                                                              |                                                                                                                                                     tCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGATTCATCGAGCCGGAATGCAGCATACAg                                                                                                                               >  2:49180/1‑149 (MQ=255) tCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAg                                                                                                                               <  2:350188/149‑1 (MQ=255)    ggATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAAc                                                                                                                            <  2:386890/149‑1 (MQ=255)               acaAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAACGAt                                                                                                                 >  2:454142/1‑149 (MQ=255)                           gAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCAt                                                                                                     <  1:23151/149‑1 (MQ=255)                              aTGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAAc                                                                                                                            >  2:436148/1‑123 (MQ=255)                              aTGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAAc                                                                                                                            <  1:436148/123‑1 (MQ=255)                                gCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAgc                                                                                                             <  2:70504/136‑1 (MQ=255)                                gCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAgc                                                                                                             >  1:70504/1‑136 (MQ=255)                                         cACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAGGATCAGCGCCGCCATTGACCAGaaaaaac                                                                                       >  1:20429/1‑147 (MQ=255)                                         cACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATACAGGTAAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCCGGTAAAGATCAGCGCCGCCATTGACCAGAAAAAcc                                                                                       >  1:172074/1‑149 (MQ=255)                                                                        gTGATGGTGTCAAAACCCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGaaaa                                                        <  1:331330/149‑1 (MQ=255)                                                                                       cTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTg                                                                  <  1:288525/124‑1 (MQ=255)                                                                                       cTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTg                                                                  >  2:288525/1‑124 (MQ=255)                                                                                           aaCCGATTCTGTAATTTAGGTTAGCTTCCAGAAACATCAAGCTGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCTCGGAAATGATCACTGGCAGAGAAAACATCCCCGCGCCATTAATg                                     <  2:189201/149‑1 (MQ=255)                                                                                              cGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCGTTGACCAGAAAAACCACGCCCGGGACATGACCACTGGCAGAGAAAACCTCCCTGCGCCCATAATGGtc                                  >  2:143148/1‑148 (MQ=255)                                                                                                      tAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATcc                                                   <  1:3143/124‑1 (MQ=255)                                                                                                      tAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATcc                                                   >  2:3143/1‑124 (MQ=255)                                                                                                        aTTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATaa                        >  2:416414/1‑149 (MQ=255)                                                                                                          tacggTTAGCTTCCAGAATCATCAAGGCTGAATGCAGCATACAGACCAAGGTAAAGAGCAGCGCCGCCATTGACCAGAAAATCCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATc                      <  1:115983/146‑1 (MQ=255)                                                                                                          tCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATc                      <  1:416414/149‑1 (MQ=255)                                                                                                             ggTTAGCTTCCAGAATCATCAAGCCCGACGGCACCATTCAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATcacc                   >  1:375835/1‑149 (MQ=255)                                                                                                                   cTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACAActccg             >  1:32475/1‑149 (MQ=255)                                                                                                                     tCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCAAAGCGCCAATAATGGTGCCGCAGATACTCACCCcgaagca           >  1:232460/1‑144 (MQ=255)                                                                                                                       cAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCaa         <  1:499095/149‑1 (MQ=255)                                                                                                                          aaTCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGc                                                                                   <  2:206398/72‑1 (MQ=255)                                                                                                                          aaTCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGc                                                                                   >  1:206398/1‑72 (MQ=255)                                                                                                                            tcatcaAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCAcgccgc            >  2:100348/1‑141 (MQ=255)                                                                                                                            tcatcaAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCAcgccgc            <  1:100348/141‑1 (MQ=255)                                                                                                                            tcatcaAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCACCGCCATTGACCAGAAAAACCACGCCCCGAACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTCCGGCCGATAATCAAGACGCCGCCAagcagc    >  1:23366/1‑149 (MQ=255)                                                                                                                              atcaAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGCAAATCACCCCGCCGCCAAGCACCgc  >  1:252432/1‑148 (MQ=255)                                                                                                                              |                                                                                                                                                     TCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCTTTGCCCAGCAAATCTTTGGTGATGGTGTCAAAACTCGAACCGATTCTGTAATTCAGGTTAGCTTCCAGAATCATCAAGCCGGAATGCAGCATACAGAACCAGGTAAAGATCAGCGCCGCCATTGACCAGAAAAACCACGCCCCGGACATGACCACTGGCAGAGAAAACATCCCTGCGCCAATAATGGTGCCGCCGATAATCACCACGCCGCCAAGCAGCGA  >  NC_000913_3_pae_tpiA/3305511‑3305784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.