New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1097101	22 (0.760)	7 (0.260)	4/270	3.6	31.3%	intergenic (+272/+464)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913_3_pae_tpiA	= 1097467	10 (0.370)					intergenic (+638/+98)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.

TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATA  >  NC_000913_3_pae_tpiA/1097319‑1097608                                                                                                                                                     |                                                                                                                                              tCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTc                                                                                                                                               <  2:376779/149‑1 (MQ=32) gccccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTc                                                                                                                                               <  1:489678/148‑1 (MQ=17)   cccccGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTGGCTCGCCCTGCGGGAAGCCCGCTCCCGGCGGTCACGGGCTGTCCAACTGGCTGTCGc                                                                                                                                             >  1:34037/1‑149 (MQ=11)    ccccGGTGTGCGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTAAAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGAGCAGCCCGCTCACTGCGTTCACGGTCTGTCCCACTGCCTGTCGcc                                                                                                                                            >  2:126046/1‑149 (MQ=11)                cAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCTAGTTGTCGAAcc                                                                                                                                >  1:448926/1‑149 (MQ=17)                                                                                                                         tGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa                       >  2:325451/1‑149 (MQ=32)                                                                                                                           cGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcc                     >  1:90837/1‑149 (MQ=34)                                                                                                                                aCGGTCTGTGCAACTGTCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGa                <  1:154376/149‑1 (MQ=255)                                                                                                                                    tCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGGCAccccccactcg            >  2:158394/1‑143 (MQ=9)                                                                                                                                        tCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCGCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCCTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc        <  2:84752/149‑1 (MQ=255)                                                                                                                                         ccAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGcc       >  1:189072/1‑149 (MQ=255)                                                                                                                                            aCTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAACAAAAAGGCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGta    <  2:363965/149‑1 (MQ=255)                                                                                                                                              tGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCACTATACGAAACAAAAGCCCGTACTTTCGTACGAGCTCTCCTTTAAATATGGCGGTGAGGGGGGGGTTCGAACCCCCGATACTTTGCCGgata  >  1:107660/1‑149 (MQ=14)                                                                                                                                              tGGCTGTCGCCAGTTGTCAACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGtata  <  1:79120/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              TCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATA  >  NC_000913_3_pae_tpiA/1097319‑1097608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.