| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 4 (0.140) | 21 (0.820) | 20/254 | 0.4 | 86.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 3 (0.120) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
TTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTG‑GCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA > NC_000913_3_pae_tpiA/1209471‑1209767 | ttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAc < 2:247433/149‑1 (MQ=255) gcagatgcttttgcggcatcccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt < 1:170410‑M2/7‑1 (MQ=255) cccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAAt < 2:268978‑M2/32‑1 (MQ=255) atctgaaggactacggctggctcaatatcagcacacatatccgttatagctatgaaaccggtgcttcctaatgtagccgtggctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATgg < 2:155970‑M2/34‑1 (MQ=255) atgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatcat > 1:213380‑M2/110‑149 (MQ=255) gAAAAAGCGGCACCAGTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCTACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTTTCCCAAACCATCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 2:353007/149‑1 (MQ=255) ctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAACCAAATGGCATCATTCCTGCTTTTACCa > 2:335562‑M2/96‑149 (MQ=255) tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAg > 1:83012‑M2/95‑149 (MQ=255) tcaataccaccaatcataaccgataccacgcccaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttcccccaaaccaaCGCTTATAAAAATGAAGAAATAACAAGCAAATAGCAACATTCCTCCTTTTACCAg > 2:488382‑M2/95‑149 (MQ=255) caatccgaaccggtatagctatgaaaccggtgctttctaatgtagccgttgctgcattgagttttgctccttctcccaacccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGGTTTaa < 2:416165‑M2/65‑1 (MQ=255) caatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa > 2:443077‑M2/85‑149 (MQ=255) aatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc < 2:83012‑M2/66‑1 (MQ=255) atcataaccggtatagctatgaaaccggtgcgtcctcatgtagccgttgctgcattgcgttttgctccttctcccaaaccaaCGTTTATGAAAATGCAGAAATCACAATCAAATGACATCATTCCTGCTTTTACCAGGGGGATTTAACa > 2:85930‑M2/83‑149 (MQ=255) atcataaacggtatagctatgaaacgtgtgcgtccgcatgtaggcgttgctgtattgagttttgctgcttctcccaagccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa < 2:417840‑M2/67‑1 (MQ=255) tcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt < 1:75130‑M2/68‑1 (MQ=255) ataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAAAGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGAGGGATTTAACCTGc > 1:478553‑M2/80‑149 (MQ=255) acctgtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa > 2:341488‑M2/77‑149 (MQ=255) tagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAATAAATAACAAGCAAATGGCATCATTCCTTCTTTTACCAGGGGGATTTAACATGCTTATTG‑GCTa < 1:142444‑M2/80‑1 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTTTTG‑GCTATGTa > 1:298026‑M2/66‑149 (MQ=255) taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTG‑GCTATGTACGCGTATCAACAAATGAc > 2:118932‑M2/48‑149 (MQ=255) gtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTG‑GCTATGTACGCGTATCAACAAATGACCAGa > 1:339489‑M2/44‑149 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTG‑GCTATGTACGCGTATCAACAAATGACCAGaact > 2:342005‑M2/41‑148 (MQ=255) aacAACAGGGAATGCAGATCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTG‑GCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 2:366264/147‑1 (MQ=255) ctgcattgagttttgctccttctcccaaaccaaCGATGATGAAAATGAAGAAATAACAAGCAAATGACATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTA‑GCTATGTACGCGTATCAACAAATGACCAAACCACAGATCt > 2:43033‑M2/34‑149 (MQ=255) tccgaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTG‑GCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgt < 2:97103‑M2/138‑1 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTG‑GCTATGTACGCGTATCAACAAATGACCAGAACCCAGATCTACAACGTAATGCGCTAAACTCTGc > 2:9003‑M2/10‑149 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTG‑GCTATGTACGCGTATCAACAAATGACCAGAACACAGAGCTACAACGTAATCCGCAGAActgtga > 1:163032‑M2/10‑148 (MQ=255) caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTG‑GCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACACCGTAATGCGCTGAACTGTGCAggagg > 1:235404‑M2/4‑147 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTG‑GCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCg > 1:3305‑M2/2‑149 (MQ=255) cGTTTATGACAATGAAGAAATAACAGGCAATAAGCATCCTTAGCAACTTTACCAGGGTGATTT‑ACCCGGTCATTGAGCGATATTCAGAAAAGAGCAAAGGTCCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGa < 1:497743/149‑1 (MQ=255) | TTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTG‑GCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA > NC_000913_3_pae_tpiA/1209471‑1209767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |