BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1096992 =	126 (0.960)	23 (0.180)	20/242	10.8	16.0%	intergenic (+163/+573)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
*	?	NC_000913_3_pae_tpiA	1097187 =	NA (NA)	23 (0.180)	20/242	10.8	16.0%	intergenic (+358/+378)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 126 total aligned reads displayed.

GTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCC  >  NC_000913_3_pae_tpiA/1096844‑1097140

gTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCg                                                                                                                                                     >  1:241200/1‑150 (MQ=255)

     cAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACtt                                                                                                                                                >  4:347811/1‑150 (MQ=255)

         taataCATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGt                                                                                                                                            >  1:1156481/1‑150 (MQ=255)

          aataCATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCGCGTACTTTCGTa                                                                                                                                           <  1:585860/150‑1 (MQ=255)

            taCATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACg                                                                                                                                         >  2:1536745/1‑150 (MQ=255)

               atatatGTTCTGTACTCTCTTGCGCATTTTGATTGTTGAATGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAAACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTAATTTCGTAAGaac                                                                                                                                      >  2:827407/1‑148 (MQ=255)

                  tatGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGctct                                                                                                                                   >  3:534883/1‑150 (MQ=255)

                   atGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCtctt                                                                                                                                  <  2:1360263/150‑1 (MQ=255)

                      ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTcttctt                                                                                                                               >  1:669579/1‑150 (MQ=255)

                        cTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTa                                                                                                                             >  1:1361607/1‑150 (MQ=255)

                          gTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaaa                                                                                                                           <  4:664429/150‑1 (MQ=255)

                          gTACTATCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCGTTaaa                                                                                                                           <  4:795300/150‑1 (MQ=255)

                             ctctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAatat                                                                                                                        <  2:669579/150‑1 (MQ=255)

                              tctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGGTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATg                                                                                                                       >  3:310874/1‑150 (MQ=255)

                                   tGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGt                                                                                                                  <  4:534883/150‑1 (MQ=255)

                                   tGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCCCCATAACAGACGTGGGCGGGGGCACCCGGTGTGTGAAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGt                                                                                                                  <  4:324956/150‑1 (MQ=255)

                                     cgcATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGa                                                                                                                <  2:326873/150‑1 (MQ=255)

                                     cgcATTTTGATTGTTGACTGAGCAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGa                                                                                                                >  2:103204/1‑150 (MQ=255)

                                     cgcATATTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCATCTTTAAATATGGCggcgg                                                                                                                >  4:303244/1‑147 (MQ=255)

                                      gcATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTc                                                                                                                                              >  2:1504714/1‑119 (MQ=255)

                                      gcATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTc                                                                                                                                              <  1:1504714/119‑1 (MQ=255)

                                       cATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgg                                                                                                              <  2:1538248/150‑1 (MQ=255)

                                        aTTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggg                                                                                                             >  4:85122/1‑150 (MQ=255)

                                        aTTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggg                                                                                                             <  2:900780/150‑1 (MQ=255)

                                        aTTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggg                                                                                                             <  2:241200/150‑1 (MQ=255)

                                          tttGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggg                                                                                                           <  2:880691/150‑1 (MQ=255)

                                             gATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCATAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAATAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGa                                                                                                        >  3:286324/1‑150 (MQ=255)

                                               ttgttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGCGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAtt                                                                                                      <  1:827407/150‑1 (MQ=255)

                                               ttgttgACTGAGCAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAtt                                                                                                      <  1:103204/150‑1 (MQ=255)

                                                  ttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGAc                                                                                                   <  2:91949/150‑1 (MQ=255)

                                                  ttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGAc                                                                                                   >  2:149280/1‑150 (MQ=255)

                                                    gACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtc                                                                                                 >  3:858739/1‑150 (MQ=255)

                                                    gACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGGGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTGTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtc                                                                                                 <  1:1151306/150‑1 (MQ=255)

                                                     aCTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCtcttct                                                                                                                                >  1:1415563/1‑118 (MQ=255)

                                                     aCTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCtcttct                                                                                                                                <  2:1415563/118‑1 (MQ=255)

                                                     aCTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAATGACtcg                                                                                                >  1:916045/1‑150 (MQ=255)

                                                           tAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcgc                                                                                          <  1:1536745/150‑1 (MQ=255)

                                                             aCCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGCTTGACTCGCTtcgctc                                                                                        >  2:1023075/1‑150 (MQ=255)

                                                             aCCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCGCTCCTTAAAATATGGCGGTGGGGGGGGGATTGACTTGCTtcgctc                                                                                        >  2:1370106/1‑150 (MQ=21)

                                                                aGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGcc                                                                                     >  3:566316/1‑150 (MQ=255)

                                                                 gACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGa                                                                                                    >  4:215177/1‑134 (MQ=255)

                                                                  aCAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGCGGGGGGGATTGACTCGCTTCGCTCGCCCt                                                                                   >  2:1456636/1‑150 (MQ=255)

                                                                  aCAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCCTCGCTCGcccg                                                                                   >  1:32358/1‑149 (MQ=255)

                                                                    attttttgtgCTCGATTTCCCTTCGCCCTAACTGACGTGTGCGGGGCCCCCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGc                                                                                 <  1:540507/144‑1 (MQ=14)

                                                                    aGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGc                                                                                 >  2:704575/1‑150 (MQ=255)

                                                                    aGTCGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGa                                                                                                    <  2:641008/133‑1 (MQ=255)

                                                                    aGTCGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGa                                                                                                    >  1:641008/1‑133 (MQ=255)

                                                                     gTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCg                                                                                <  4:194196/150‑1 (MQ=255)

                                                                     gTTGATGTGAACCATTTCCCCTTGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGTAATATAAA‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCg                                                                                <  2:463388/150‑1 (MQ=18)

                                                                            tgCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCttt                                                                                                                              <  2:635749/97‑1 (MQ=255)

                                                                            tgCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCttt                                                                                                                              >  1:635749/1‑97 (MQ=255)

                                                                            tgCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGcc                                                                         <  1:965860/150‑1 (MQ=255)

                                                                              cACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCg                                                                       >  2:237771/1‑150 (MQ=255)

                                                                              cACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCg                                                                       >  2:237790/1‑150 (MQ=255)

                                                                              cACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCg                                                                       >  2:16001/1‑150 (MQ=255)

                                                                              cACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCg                                                                       >  3:435013/1‑150 (MQ=255)

                                                                                  aTTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCa                                                                   <  2:1175053/150‑1 (MQ=255)

                                                                                    ttCCCCTCGCCCTAACAGCCGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACt                                                                 <  2:1111172/150‑1 (MQ=255)

                                                                                    ttCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTCCGTACGAGCTCTTCTTTAAGTATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACt                                                                 <  2:7563/150‑1 (MQ=255)

                                                                                     tCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTg                                                                <  1:16001/150‑1 (MQ=255)

                                                                                      ccccTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGc                                                               >  1:1227402/1‑150 (MQ=255)

                                                                                      ccccGCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAACGCCCGTACTTTCGGACGAGCAATTCTTTAATTATGGCGGTGAGGGGGGGATTGGCTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGc                                                               <  1:1023075/150‑1 (MQ=17)

                                                                                       cccTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCg                                                              >  3:895210/1‑150 (MQ=255)

                                                                                        ccTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGt                                                             <  1:237790/150‑1 (MQ=255)

                                                                                        ccTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGt                                                             <  1:237771/150‑1 (MQ=255)

                                                                                         cTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt                                                            >  4:928667/1‑150 (MQ=255)

                                                                                         cTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt                                                            >  1:897850/1‑150 (MQ=255)

                                                                                          tCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTc                                                           <  3:150913/150‑1 (MQ=255)

                                                                                          tCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTc                                                           <  4:785178/150‑1 (MQ=255)

                                                                                             cccTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACg                                                        >  4:360471/1‑150 (MQ=255)

                                                                                             cccTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACg                                                        <  4:486372/150‑1 (MQ=255)

                                                                                             cccTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACg                                                        <  4:895210/150‑1 (MQ=255)

                                                                                               cTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt                                                      <  2:944766/150‑1 (MQ=255)

                                                                                               cTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGt                                                      <  4:214657/150‑1 (MQ=255)

                                                                                                tAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCAc                                                                  <  1:100013/137‑1 (MQ=255)

                                                                                                 aaCAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCg                                                              >  2:1431189/1‑140 (MQ=255)

                                                                                                 aaCAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCg                                                              <  1:1431189/140‑1 (MQ=255)

                                                                                                 aaCAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCt                                                    <  4:566316/150‑1 (MQ=255)

                                                                                                 aaCAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCt                                                    <  3:928667/150‑1 (MQ=255)

                                                                                                  aCAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCATCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCATCGATCGCCCTTAGGGCAGCCCGCTCACTCCGTTCCCgccatg                                                   >  2:574790/1‑145 (MQ=14)

                                                                                                      aCGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGAt                                                                                                       <  1:1541027/94‑1 (MQ=255)

                                                                                                        gTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCggg                                                                              <  4:79296/117‑1 (MQ=255)

                                                                                                          gggCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTg                                           >  1:1408474/1‑150 (MQ=38)

                                                                                                               ggggCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGt                                      <  4:367126/150‑1 (MQ=34)

                                                                                                                  gCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGc                                   <  3:360471/150‑1 (MQ=32)

                                                                                                                    aCCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaa                                                                                                                            >  2:380448/1‑59 (MQ=31)

                                                                                                                              tgCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAcc                       >  3:632320/1‑150 (MQ=31)

                                                                                                                                cAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAcccc                     <  2:1361607/150‑1 (MQ=32)

                                                                                                                                aaaTAAACA‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAcccc                     <  3:95233/149‑1 (MQ=17)

                                                                                                                                 aaTATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAccccc                    >  3:202194/1‑150 (MQ=32)

                                                                                                                                   tataCG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCgg                  >  2:1575319/1‑150 (MQ=32)

                                                                                                                                     taCG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTc                >  4:526965/1‑150 (MQ=32)

                                                                                                                                      aCG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCg               >  1:243335/1‑150 (MQ=32)

                                                                                                                                        g‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCggg             >  2:354258/1‑150 (MQ=32)

                                                                                                                                            aaaaaaaGCCCGTACTTTCGTACGAGCTCCTCAATAACTCACGCGGGGAGGGGAGGATTGACTCGCTTCGCTGTCCCTGCGGGCAGCCCGCTCACTACATACACAGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGCCGGGGc           >  1:1385350/1‑150 (MQ=11)

                                                                                                                                               aaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtc        <  2:1408474/150‑1 (MQ=32)

                                                                                                                                                aaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtct       <  1:579965/150‑1 (MQ=32)

                                                                                                                                                   gCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtctc      >  2:1102907/1‑148 (MQ=32)

                                                                                                                                                   gCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTtctc      <  1:1102907/148‑1 (MQ=32)

                                                                                                                                                     ccGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATcc  >  2:157423/1‑150 (MQ=32)

GTGACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACG‑‑AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCC  >  NC_000913_3_pae_tpiA/1096844‑1097140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.