New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4542606	42 (0.740)	6 (0.110)	6/268	6.7	11.7%	intergenic (+57/‑425)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	NC_000913_3_pae_tpiA	= 4542902	51 (0.960)					intergenic (+353/‑129)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGT  >  NC_000913_3_pae_tpiA/4542461‑4542753                                                                                                                                                  |                                                                                                                                                    gTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAc                                                                                                                                                  <  1:522547/149‑1 (MQ=255)      aCCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTcc                                                                                                                                             >  1:392234/1‑149 (MQ=255)         gCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAAGTGTCCata                                                                                                                                          >  1:730404/1‑149 (MQ=255)                       tCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGATTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa                                                                                                                            >  1:123667/1‑149 (MQ=255)                        cGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCATATCTGTCCATATCACACATAATTTAc                                                                                                                           <  2:222221/149‑1 (MQ=255)                         gTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAATTAAGTTACg                                                                                                                          >  1:95093/1‑149 (MQ=255)                                      aggggAAAGAAAGAATCTCAAAAACGAAAAATGAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa                                                                                                             <  2:985387/147‑1 (MQ=255)                                           aaagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAATCAtt                                                                                                        >  2:781214/1‑148 (MQ=255)                                                  taatCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAatat                                                                                                 >  2:729905/1‑149 (MQ=255)                                                     tctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaa                                                                                              >  2:502179/1‑149 (MQ=255)                                                          aaaaCGAAAAATTAAAAAGAAAAGAGTTTTAATTTAACTTATTGAAAAAAAAGTTAAAAAAACAAATAAATACAAGACAATCCGGGCCAAACTGTCCATATCATAAATAAGTTACTTATTTTTTCTCAAGCATAAAAATATTAAAAAAc                                                                                         <  2:310937/148‑1 (MQ=255)                                                            aaCGAAAAATTAAAAAAAGAAGAGGTTTGATTCAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGa                                                                                       <  1:116528/149‑1 (MQ=255)                                                                  aaaTTAAAAAGAGAAGACGTTTTAATTAATATATTGATAATAAAGTTAAAAAAACAGATAAATACAAGACCATTGGTGCCACACTTTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAACATATTAAAAAACGACaaaaa                                                                                 <  2:120087/149‑1 (MQ=255)                                                                      tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCAt                                                                             <  1:729905/149‑1 (MQ=255)                                                                          aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATACGTTACGTATTTTTTTTCAAGCATAAAAATATTAAAAAACGCCAAAAAGCATCTac                                                                         >  2:467975/1‑148 (MQ=255)                                                                               aagagGTTTATTTTAACTTAGTAATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGCCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAATCATCTAACTGtt                                                                    <  2:597745/149‑1 (MQ=255)                                                                                  atgttgaaTTAAACTTATAAAAAACAAAATTAAAAAAACAAATAAATACAAGACAATGGGGGCCAAACTGTCCATATCATAAATAAGTTAAGTATTTTTTTTCAAGCATAAAAATATTAAAAAAAAAAAAAAAGCATCTAACGGTTTGa                                                                 <  2:477216/142‑1 (MQ=255)                                                                                  agGTTTGATTTAACTTATTGATAATCAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGa                                                                 <  1:915357/149‑1 (MQ=255)                                                                                     tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATGTTAAAAAAAGCTACAAAGCATCTAACTCTTTGatat                                                              >  1:962173/1‑149 (MQ=255)                                                                                     tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGatat                                                              <  1:571483/149‑1 (MQ=255)                                                                                        gATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTa                                                           >  1:178939/1‑149 (MQ=255)                                                                                          tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaaa                                                         <  2:26437/149‑1 (MQ=255)                                                                                          tttAACTTAATGATAATAAAGTTAAAAAAAAAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaaa                                                         <  2:26419/149‑1 (MQ=255)                                                                                                ttATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                   <  1:728492/149‑1 (MQ=255)                                                                                                ttAATGATAAGAAAGTTAAAAAAACAAATAAATACAATACAATTGGCGCCAAACTGTCCATATCATATATAAGTTACGTATTTTTTTTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTAttt                                                   <  2:792839/149‑1 (MQ=255)                                                                                                gtataGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAACATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTAGTATGTAAATTAttt                                                   >  1:959087/2‑149 (MQ=255)                                                                                                          cagaattAAAAAAACAAATAAATACAAGACAATTGGGGTCAAACTGCCTATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAATGACACAAAGCATCTAACTGTTTGATATGTAAATTATTTCTACTGTaaa                                         <  2:852463/144‑1 (MQ=255)                                                                                                           aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaat                                        >  1:868525/1‑149 (MQ=255)                                                                                                              gTTAAAAACACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCACGAATAAAAATATTAAGACACGACAAAAAGCATCTAACTGTTTGAGATCTCAATTCTTTCTATTGTAaattaa                                     >  2:855492/1‑149 (MQ=255)                                                                                                               ttAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaat                                    >  1:8299/1‑149 (MQ=255)                                                                                                               gtAAAAAAGAAAATAAATAAAAGACAAAGGGGGCCAATCTGTCCATATCATAAAGAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAAAAAAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaat                                    <  2:804467/148‑1 (MQ=255)                                                                                                                 aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                                  <  1:415404/149‑1 (MQ=255)                                                                                                                 aaaaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                                  >  1:925990/1‑149 (MQ=255)                                                                                                                           ataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATGAGTTAGGTATTTTTTCTAAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATAGGTAAATTATTTCTATTGTAAATTAATTTAACATAACCt                        >  2:523145/1‑149 (MQ=255)                                                                                                                             aaataCAAGACAATTGAGGACAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATAAAAAAAAAAAAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTcc                      <  2:479633/149‑1 (MQ=255)                                                                                                                             aaataAAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTcc                      <  1:755347/149‑1 (MQ=255)                                                                                                                                   aaGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCGATTGTAAATTAATTTCACATCACCTCCGCtata                >  1:102110/1‑149 (MQ=255)                                                                                                                                      aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGt             >  1:711793/1‑149 (MQ=255)                                                                                                                                          ttGGTGACAAACTTTCCATATCATAAGTAAGTTACGTATTTTGTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAg         <  2:303615/149‑1 (MQ=255)                                                                                                                                                 cAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATc                                                                            <  1:643092/75‑1 (MQ=255)                                                                                                                                                 cAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATc                                                                            >  2:643092/1‑75 (MQ=255)                                                                                                                                                 cAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGt  <  1:502179/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACGT  >  NC_000913_3_pae_tpiA/4542461‑4542753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.