New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2729630 =	NA (NA)	6 (0.110)	6/276	6.9	NA	noncoding (1528/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
	?	NC_000913_3_pae_tpiA	2729652 =	NA (NA)					noncoding (1506/1542 nt)	rrsG	16S ribosomal RNA of rrnG operon
Rejected: Coverage evenness skew score above cutoff.

AGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAA  >  NC_000913_3_pae_tpiA/2729504‑2729714                                                                                                                                                     |                                                               aGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTGGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCCTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTa                                                                <  2:503544/149‑1 (MQ=255)  gAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTAc                                                               <  1:531549/149‑1 (MQ=255)   aaaGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTAcc                                                              >  1:877183/1‑149 (MQ=255)     aGCGAAGCGCCTTAATATCGTCAGCCGCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCtt                                                            <  2:15390/149‑1 (MQ=14)       cGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTTTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGt                                                          <  1:140253/149‑1 (MQ=255)        gAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGTAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt                                                         >  1:533455/1‑149 (MQ=255)        gAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt                                                         <  2:630278/149‑1 (MQ=40)        gAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGtt                                                         <  1:391253/149‑1 (MQ=40)          aCGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTAc                                                       >  1:167421/1‑149 (MQ=255)              ccTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTTTTACGACt                                                   >  2:803207/1‑149 (MQ=255)              ccTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGCCt                                                   >  1:716399/1‑149 (MQ=255)               cTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACtt                                                  <  2:810799/149‑1 (MQ=255)                ttATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAAGTTCCCCTACGGTTACCTTGTTACGACTTc                                                 >  1:112288/1‑149 (MQ=255)                   ttCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGTACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCAcc                                              >  1:549816/1‑149 (MQ=255)                   ttCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAATGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCAcc                                              <  2:284136/149‑1 (MQ=255)                    tctcATCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTCTAAGGATAGGAGGTGATCCCAACGCAGGTTCCGCTACGGTTAGCTTGTTACGACGTCAccc                                             >  2:770223/1‑149 (MQ=14)                      tctTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACGATCTGTATGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGACGTCCTCCCACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCAcccct                                           <  2:768578/149‑2 (MQ=14)                        ttCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGt                                         >  1:368490/1‑149 (MQ=255)                          cAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCa                                       <  1:543822/149‑1 (MQ=255)                                 aCTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATca                                <  2:961242/149‑1 (MQ=40)                                   tCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGCCAATCTGTGTGAGCACTGCAAAGTACGCTTATTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATcaca                              >  2:7932/1‑149 (MQ=255)                                        aCGCGTAAACTCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTg                         <  2:331669/149‑1 (MQ=255)                                        aCGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTg                         <  2:440965/149‑1 (MQ=255)                                          gcggtaaCGCTTTGGTAGTCACTTTTCTTCAGTCGACCTGTGTGAGCACTGCAAAGTACGCTTCTTTGAGGTAGGGAGGTGATCCAACCGCTGGTTCCCCTGCGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCTCAACGTGGt                       <  2:773603/144‑1 (MQ=11)                                                     ttGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTcc            >  1:392124/1‑149 (MQ=38)                                                          aTTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGCCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAg       <  1:297528/149‑1 (MQ=21)                                                           ttCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAgg      >  1:900939/1‑149 (MQ=33)                                                               cTTTTCATCAGACCATCTGTGGGAGCTCTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCGAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACGTCACCCCAGTCATGAATCATAAAGTGGTAAGCGCCCTACCGAAGGTTaa  <  2:917094/149‑1 (MQ=11)                                                               cTTTGCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTaa  >  2:308510/1‑149 (MQ=11)                                                                                                                                                     |                                                               AGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAA  >  NC_000913_3_pae_tpiA/2729504‑2729714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.