New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3944978	NA (NA)	8 (0.150)	7/274	6.4	33.0%	noncoding (1275/2904 nt)	rrlC	23S ribosomal RNA of rrnC operon
	?	NC_000913_3_pae_tpiA	= 4038811	17 (0.300)					noncoding (1293/2905 nt)	rrlA	23S ribosomal RNA of rrnA operon
Rejected: Coverage evenness skew score above cutoff.

ATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAA  >  NC_000913_3_pae_tpiA/4038665‑4038871                                                                                                                                                   |                                                             aTGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCg                                                            >  2:294927/1‑149 (MQ=255)       cGAAGCCGCGGCAGGGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa                                                      <  2:412656/149‑1 (MQ=255)                  cAGCGACCCTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGGGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGtt                                           <  1:263689/149‑1 (MQ=255)                      gACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCCGTGAAGGTGAGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGACCGCCCGCCGGAAGACCCAGCGTTCCTg                                       >  2:642718/1‑149 (MQ=11)                       acacTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGCAAAGACCGCTCGCCGGAAGACCAAGGGTTCCTGt                                      >  2:361510/1‑149 (MQ=255)                         acTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGCAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc                                    >  1:155137/1‑149 (MQ=25)                             tgtgTTGTTGGGTAGGGGAGTGTTCTGTAATCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGCTTCCTGTCCAGCg                                >  1:983621/1‑149 (MQ=255)                                     tgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCgg                        <  1:106733/149‑1 (MQ=32)                                      gggTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCggg                       <  2:780290/149‑1 (MQ=32)                                          aGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAg                   <  1:272945/149‑1 (MQ=32)                                             ggAGCGTTGTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATACAGCGGGGGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt                <  1:450124/149‑1 (MQ=12)                                                  gTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTAACAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTc           <  1:838111/149‑1 (MQ=17)                                                   ttCTGTAAGCCTGTGATGGCTTTCTGTGAGCCGTGATGCGCCTATTAGAATTGCGAATCATGACATAAGGAACGATAAAGCGCGGGAAAAGCCCGCTAGCCGGAAGACCAAGGGTTCCTGTAAAACGTGACTCGGGGCAGGGTGAGTCg          >  2:975790/1‑149 (MQ=2)                                                   ttCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGCAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCCAGGGTTCCTGTCCAAAGTTAATCGGGGCAGGGTGAGTCg          >  2:827512/1‑149 (MQ=12)                                                     cTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCGTACATAAGTAACGATAAAGCTCGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc        <  1:14133/149‑1 (MQ=255)                                                      tGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGACTGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCACGGGTTCCTGTCCAAGGTTAATCGGGGCAGGGGGGGTGGAcc       >  2:847745/1‑149 (MQ=11)                                                           gCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGCCATAAGTAACGAAAAAGCGGGGGAAAAGCCCGCTCGCCGGAAGAACAAGGGTTCCTGTCCAACGATAATCGGGGCAAGGTAAGGCGACCCCTaa  >  2:401596/1‑149 (MQ=11)                                                                                                                                                   |                                                             ATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAA  >  NC_000913_3_pae_tpiA/4038665‑4038871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.