New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 715221112 (0.990)16 (0.150) 16/230 10.0 13.3% intergenic (+23/‑191) pgm/ybfP phosphoglucomutase/lipoprotein
?NC_000913_3_pae_tpiA = 715231 107 (1.030)intergenic (+33/‑181) pgm/ybfP phosphoglucomutase/lipoprotein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 123 total aligned reads displayed.

GGCACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAACACTT  >  NC_000913_3_pae_tpiA/715085‑715378
                                                                                                                                                  |                                                                                                                                                   
ggCACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGc                                                                                                                                                  >  1:1064901/1‑150 (MQ=255)
 gCACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTTAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGcc                                                                                                                                                 <  3:623858/150‑1 (MQ=255)
 gCACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGcc                                                                                                                                                 >  2:1263810/1‑150 (MQ=255)
  cACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATTGccc                                                                                                                                                >  3:593341/1‑150 (MQ=255)
     ggAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCttt                                                                                                                                             <  2:554467/150‑1 (MQ=255)
      gAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCtttt                                                                                                                                            >  1:293829/1‑150 (MQ=255)
       aaGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCGCttttt                                                                                                                                           <  4:401439/150‑1 (MQ=255)
         gACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTa                                                                                                                                         <  3:439282/150‑1 (MQ=255)
              cggtaAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTAt                                                                                                                                    <  2:903578/147‑1 (MQ=255)
                ataAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGa                                                                                                                                  <  2:1575/150‑1 (MQ=255)
                ataAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGa                                                                                                                                  >  3:380635/1‑150 (MQ=255)
                       cTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAacac                                                                                                                           <  2:1151296/150‑1 (MQ=255)
                          cTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGa                                                                                                                        <  4:780710/150‑1 (MQ=255)
                           tGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAGCGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGaa                                                                                                                       <  2:889497/150‑1 (MQ=255)
                           tGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTATTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGTTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGaa                                                                                                                       <  2:1225568/150‑1 (MQ=255)
                             cGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGAt                                                                                                                                                     <  3:832475/118‑1 (MQ=255)
                             cGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGAc                                                                                                                                 <  3:595385/138‑1 (MQ=255)
                             cGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGAc                                                                                                                                 >  4:595385/1‑138 (MQ=255)
                             cGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAAtt                                                                                                                     >  3:364679/1‑150 (MQ=255)
                                aaGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAGTTGcc                                                                                                                  <  4:65916/150‑1 (MQ=255)
                                        tCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCttttttt                                                                                                                                         <  4:808604/119‑2 (MQ=255)
                                        tCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCttttttt                                                                                                                                         >  3:808604/1‑118 (MQ=255)
                                         cGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCt                                                                                                         <  1:1062230/150‑1 (MQ=255)
                                          ggTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTa                                                                                                        >  2:263476/1‑150 (MQ=255)
                                          ggTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTa                                                                                                        >  4:352068/1‑150 (MQ=255)
                                          ggTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTa                                                                                                        >  2:953842/1‑150 (MQ=255)
                                           gTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTAc                                                                                                       <  1:953842/150‑1 (MQ=255)
                                           gTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTAc                                                                                                       <  3:352068/150‑1 (MQ=255)
                                              aagaaCATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCt                                                                                                    >  1:493195/1‑150 (MQ=255)
                                               agaaCATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCtt                                                                                                   <  4:545195/150‑1 (MQ=255)
                                                 aaCATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTAt                                                                                                 <  3:464518/150‑1 (MQ=255)
                                                   cATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCa                                                                                               <  3:10729/150‑1 (MQ=255)
                                                       gCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGcc                                                                                           >  4:635192/1‑150 (MQ=255)
                                                        cAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCTCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCt                                                                                          >  3:837894/1‑150 (MQ=255)
                                                         aaGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAaca                                                                                                                            <  3:813433/115‑1 (MQ=255)
                                                         aaGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAaca                                                                                                                            >  4:813433/1‑115 (MQ=255)
                                                         aaGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                                                                         >  2:523033/1‑150 (MQ=255)
                                                         aaGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                                                                         >  2:523215/1‑150 (MQ=255)
                                                         aaGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                                                                         <  2:692585/150‑1 (MQ=255)
                                                           gCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTAGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACg                                                                                       >  1:1348669/1‑150 (MQ=255)
                                                                   agaaagaaGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGcc                                                                                                                                                 >  3:678116/1‑84 (MQ=255)
                                                                   agaaagaaGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGcc                                                                                                                                                 <  4:678116/84‑1 (MQ=255)
                                                                   agaaagaaGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCtt                                                                                                                                              <  1:691689/87‑1 (MQ=255)
                                                                   agaaagaaGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCtt                                                                                                                                              >  2:691689/1‑87 (MQ=255)
                                                                   agaaagaaGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCa                                                                                               <  3:568256/134‑1 (MQ=255)
                                                                   agaaagaaGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCa                                                                                               >  4:568256/1‑134 (MQ=255)
                                                                    gaaagcaGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTg                                                                              <  4:178397/150‑1 (MQ=255)
                                                                    gaaagaaGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTg                                                                              <  1:263476/150‑1 (MQ=255)
                                                                       agaagCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCaa                                                                           <  1:979639/150‑1 (MQ=255)
                                                                          agCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAatat                                                                        >  4:497209/1‑150 (MQ=255)
                                                                           gCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAatata                                                                       <  1:243075/150‑1 (MQ=255)
                                                                              gTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGcaat                                                                                         <  4:699115/129‑4 (MQ=255)
                                                                              gTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGcaat                                                                                         >  3:699115/1‑126 (MQ=255)
                                                                              gTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGCGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGcaat                                                                                         >  3:699116/1‑126 (MQ=255)
                                                                                tGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTAc                                                                                                                                        <  1:434413/80‑1 (MQ=255)
                                                                                tGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTAc                                                                                                                                        >  2:434413/1‑80 (MQ=255)
                                                                                 gagaTTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAAt                                                                 <  4:504933/150‑1 (MQ=255)
                                                                                 gagaTTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAAt                                                                 >  2:285498/1‑150 (MQ=255)
                                                                                  agaTTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAAtt                                                                <  2:889900/150‑1 (MQ=255)
                                                                                      tGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAg                                                            <  4:613856/150‑1 (MQ=255)
                                                                                      tGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAg                                                            >  3:595647/1‑150 (MQ=255)
                                                                                       gTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGc                                                           >  3:416514/1‑150 (MQ=255)
                                                                                          aGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGAt                                                        >  1:177947/1‑150 (MQ=255)
                                                                                             gAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAAtt                                                                                                                     <  3:449435/86‑1 (MQ=255)
                                                                                             gAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAAtt                                                                                                                     >  4:449435/1‑86 (MQ=255)
                                                                                              aaGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTg                                                    >  2:328463/1‑150 (MQ=255)
                                                                                                gTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTa                                                  <  3:465845/150‑1 (MQ=255)
                                                                                                 ttCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAg                                                 <  1:1103682/150‑1 (MQ=255)
                                                                                                    tGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGcc                                              >  2:433745/1‑150 (MQ=255)
                                                                                                     gAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCg                                             >  1:808016/1‑150 (MQ=255)
                                                                                                      aaaaaCGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCgg                                            >  3:159595/1‑150 (MQ=255)
                                                                                                      aaaaaCGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCgg                                            >  4:756263/1‑150 (MQ=255)
                                                                                                              gTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCg                                    <  2:1368781/150‑1 (MQ=255)
                                                                                                                aaaCACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAgg                                      >  1:1041100/1‑146 (MQ=255)
                                                                                                                aaaCACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAgg                                      <  2:1041100/146‑1 (MQ=255)
                                                                                                                aaaCACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGtt                                  <  2:910096/150‑1 (MQ=255)
                                                                                                                      aTTTAATAAAAAAAGGTCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCAcgcc                            <  2:493195/150‑1 (MQ=255)
                                                                                                                      aTTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                                                                         <  1:338157/89‑1 (MQ=255)
                                                                                                                      aTTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTa                                                                                         >  2:338157/1‑89 (MQ=255)
                                                                                                                        ttAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATgcg                                                                                                           <  3:47807/69‑1 (MQ=255)
                                                                                                                        ttAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATgcg                                                                                                           >  4:47807/1‑69 (MQ=255)
                                                                                                                          aataaAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTaa                                                             <  2:1000039/113‑1 (MQ=255)
                                                                                                                          aataaAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTaa                                                             >  1:1000039/1‑113 (MQ=255)
                                                                                                                            taaAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATcc                      >  3:111989/1‑150 (MQ=255)
                                                                                                                                aaaaGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTaa                                                             <  1:74792/107‑1 (MQ=255)
                                                                                                                                aaaaGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTaa                                                             >  2:74792/1‑107 (MQ=255)
                                                                                                                                  aaGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCaaa                <  2:808016/150‑1 (MQ=255)
                                                                                                                                     ggCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGAt                                                                                  <  2:1023775/81‑1 (MQ=255)
                                                                                                                                     ggCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATGCGGCGTGAACGCCTTATCCGGcctacaa             <  4:445873/150‑7 (MQ=25)
                                                                                                                                     ggCGGTCGCAAGATCGCCCTTTTTTACGGATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGAt                                                                                  >  1:1023775/1‑81 (MQ=255)
                                                                                                                                      gCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAaaca            >  1:875652/1‑150 (MQ=255)
                                                                                                                                      ccgatctcAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCATACGCGGATGGTGCAATATATTGAATTTACGAGCTCTTGTCGGCCGGCCACGGCGTTCACGCCGCATCCGGCAAAaaca            <  1:555257/143‑1 (MQ=21)
                                                                                                                                       cGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAaacaa           >  1:1124024/1‑150 (MQ=255)
                                                                                                                                        ggTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGGATTGCCTGATGCTCTACGCTTATCAGGCCTACGAGGATGGTGCAAGATATTGAATTTAAGCGAGTTTGTAGGCCGGAGAAGGCGTTCACGCCGCATCTGGCAAAaacaac          <  4:380635/150‑1 (MQ=25)
                                                                                                                                        cgTCGCAAGATCGCAGTGTTTTAGGTATGACAAACAAAGTAGTGTATGATGTGCTAGACTTACCAGGCCTACGAGGATGGTGCGATATATAAAATTTCAGCGATATTGTAGACTGGATAAGGCGTTCACGCCGCATACGGCGAAaccaac          <  4:28471/149‑1 (MQ=16)
                                                                                                                                           cGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGaa       <  3:497209/150‑1 (MQ=255)
                                                                                                                                             cAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGt                                                                               <  1:839083/76‑1 (MQ=255)
                                                                                                                                             cAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGaa       <  2:371908/148‑1 (MQ=255)
                                                                                                                                              aaGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATg                                                                                                             >  1:186573/1‑45 (MQ=255)
                                                                                                                                              aaGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATg                                                                                                             <  2:186573/45‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
GGCACGGAAGACGCATATAAGATCTACTGCGAAAGCTTCCTCGGTGAAGAACATCGCAAGCAGATTGAGAAAGAAGCGGTTGAGATTGTTAGCGAAGTTCTGAAAAACGCGTAAACACATTTAATAAAAAAAGGGCGGTCGCAAGATCGCCCTTTTTTACGTATGACAAACACAGAATTGCCTGATGCGCTACGCTTATCAGGCCTACGAGGATGGTGCAATATATTGAATTTAAGCGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAACAACGAACACTT  >  NC_000913_3_pae_tpiA/715085‑715378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.