New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3423823 =	NA (NA)	11 (0.280)	7/274	4.2	100%	intergenic (‑36/+57)	rrfD/rrlD	5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon
	?	NC_000913_3_pae_tpiA	= 3946688	0 (0.000)					intergenic (+81/‑12)	rrlC/rrfC	23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon
Rejected: Coverage evenness skew score above cutoff.

GCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA  >  NC_000913_3_pae_tpiA/3946542‑3946690                                                                                                                                                   |   gCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgataa  >  2:582979/1‑147 (MQ=14)                                                                                                                                                   |   GCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA  >  NC_000913_3_pae_tpiA/3946542‑3946690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.