New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3708415 =	36 (0.870)	6 (0.160)	6/262	4.4	16.2%	intergenic (‑710/+201)	dppA/proK	dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
	?	NC_000913_3_pae_tpiA	3708442 =	29 (0.770)					intergenic (‑737/+174)	dppA/proK	dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGC  >  NC_000913_3_pae_tpiA/3708294‑3708574                                                                                                                                                     |                                                                                                                                     gccgcATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTGTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTc                                                                                                                                      <  1:141271/149‑1 (MQ=255)             aaTGGGGGGCACATTTGCCTGATGCGACGTTGACGAGTCTTATCAGGCTTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCgg                                                                                                                          <  2:94392/149‑1 (MQ=18)              aTGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTCAGCAGGCTTTTCGAATTTGGTCGGt                                                                                                                         >  1:557156/1‑149 (MQ=255)                         aTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGACTACGTCGAGTCGAACCTCCATGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGGtt                                                                                                              >  1:80472/1‑149 (MQ=255)                               cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGc                                                                                                        >  2:570959/1‑149 (MQ=255)                               cTGATGCGACCCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGc                                                                                                        <  1:129974/149‑1 (MQ=255)                                             aCGCGTCATATCAGGCCTGCGTCCAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAACCTCATGAGCTGCAGATGCAAAGAAGCCTGCTCGTTGAGCTGGCTTTTCGAATTTAGTCGGTGATAGACGATTACACGCCACTTCGTGGCCCg                                                                                          >  1:664813/1‑149 (MQ=17)                                                    ttATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCg                                                                                   <  2:539777/149‑1 (MQ=255)                                                             cTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCGTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTAGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGc                                                                          >  1:402894/1‑149 (MQ=255)                                                                cGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTgg                                                                       <  1:570959/149‑1 (MQ=255)                                                                  tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGCTGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGAATTACACGCCACTTCGCGGCCCGCCCCGCGGGCCGTCGCTGccg                                                                     >  2:60892/1‑149 (MQ=17)                                                                            ccTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTtctc                                                           <  2:643876/149‑1 (MQ=255)                                                                               cccTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCgg                                                                                  >  2:593834/1‑123 (MQ=255)                                                                               cccTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCgg                                                                                  <  1:593834/123‑1 (MQ=255)                                                                                    cccccGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCtcgcttcg                                                   <  1:77787/149‑1 (MQ=255)                                                                                       ccGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGCGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTc                                                <  1:594086/149‑1 (MQ=255)                                                                                              ttCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGGCCGTCTTGCTGTTGCGGGCGCAGCGTGCTCTCGCATCGCTctggacgc                                         >  1:420830/1‑142 (MQ=17)                                                                                               tctcATCCTCATGAGCTGCAGAGGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGaa                                        <  1:616461/149‑1 (MQ=255)                                                                                                       tCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACg                                                                <  2:22241/117‑1 (MQ=255)                                                                                                       tCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACg                                                                >  1:22241/1‑117 (MQ=255)                                                                                                         aTGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCCCTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGcc                              >  1:159004/1‑149 (MQ=255)                                                                                                              cTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTTGGTGATAGAGGATTACTCGCCACTTCGTg                                                                                               >  1:688439/1‑79 (MQ=255)                                                                                                              cTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTTGGTGATAGAGGATTACTCGCCACTTCGTg                                                                                               <  2:688439/79‑1 (MQ=255)                                                                                                                gCAGGTGCAAAAAAGCTTGCTCGTTGAGCAGGCTTTGAGGATTTGGTCGGTGATAGAGGTTTACTCGCCACTTCGTGACTCGCCCGGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGCGTCGAACCTCCCTGCCCCCgggt                       <  2:664813/149‑3 (MQ=255)                                                                                                                gCAGATGCAAAAAAGCCTGCTCGTTGAGCATGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAg                       <  1:40267/149‑1 (MQ=255)                                                                                                                     tGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTtct                  >  1:401756/1‑149 (MQ=255)                                                                                                                        aaaaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAGCCTCCCTGCCCCCGGAGGTtctgct               >  1:236932/1‑146 (MQ=255)                                                                                                                         gaaaaGCCTGCTCAACGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCGGcccc                            >  1:222449/2‑135 (MQ=255)                                                                                                                         gaaaaGCCTGCTCAACGAGCAGGCGTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGcccc                            <  2:222449/134‑1 (MQ=255)                                                                                                                            aaGCCTGCTCAACGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTc           >  1:231781/1‑149 (MQ=255)                                                                                                                                 tGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCATCATGAg      >  1:233651/1‑149 (MQ=255)                                                                                                                                     cGTTGAGCAGGCTTTTCGAATTTGGTCGGTGTTAGAGCATTACTCCACACTTCGTGGCTCGCCCTGCGGGCCGGTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGc  <  1:350213/149‑1 (MQ=38)                                                                                                                                                     |                                                                                                                                     GCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGCGCAACGTTCTCTCGCTTCGCTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGC  >  NC_000913_3_pae_tpiA/3708294‑3708574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.