mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 2,090,126 | 0 | C | T | 24.4% | 160.3 / 54.4 | 90 | intergenic (+80/‑66) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| * | NC_000913_3_pae_tpiA | 2,090,122 | 0 | A | G | 23.9% | 175.2 / 51.7 | 92 | intergenic (+76/‑70) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| * | NC_000913_3_pae_tpiA | 2,090,124 | 0 | C | G | 23.9% | 206.3 / 71.2 | 92 | intergenic (+78/‑68) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 23.9% | 338.7 / 113.4 | 185 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 450 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 4040733 = | 85 (0.680) | 27 (0.230) | 21/244 | 9.3 | 25.8% | intergenic (+97/+173) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | 4171764 = | 76 (0.650) | intergenic (+92/‑209) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3648358 | 148 (1.190) | 25 (0.220) | 20/240 | 9.5 | 15.8% | noncoding (65/84 nt) | agrB | antisense sRNA antitoxin for the DinQ toxin |
| ? | NC_000913_3_pae_tpiA | = 3648363 | 130 (1.140) | noncoding (70/84 nt) | agrB | antisense sRNA antitoxin for the DinQ toxin | |||||
| * | ? | NC_000913_3_pae_tpiA | 4542598 = | 130 (1.040) | 23 (0.200) | 20/244 | 9.7 | 15.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | 4542912 = | 134 (1.150) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | 4040719 = | 92 (0.740) | 26 (0.220) | 20/244 | 9.7 | 23.9% | intergenic (+83/+187) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | 4040742 = | 80 (0.690) | intergenic (+106/+164) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3423340 | 136 (1.090) | 26 (0.220) | 20/244 | 9.7 | 20.1% | intergenic (+146/+83) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | 4040742 = | 80 (0.690) | intergenic (+106/+164) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4542606 | 126 (1.010) | 20 (0.170) | 19/244 | 10.1 | 13.8% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_pae_tpiA | = 4542902 | 132 (1.140) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_pae_tpiA | 4171755 = | 80 (0.640) | 25 (0.220) | 18/244 | 10.4 | 26.1% | intergenic (+83/‑218) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913_3_pae_tpiA | 4171778 = | 67 (0.580) | intergenic (+106/‑195) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1097273 | 29 (0.230) | 27 (0.220) | 20/262 | 10.5 | 47.4% | intergenic (+444/+292) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_tpiA | = 1097295 | 31 (0.250) | intergenic (+466/+270) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_tpiA | = 1097114 | NA (NA) | 28 (0.220) | 20/262 | 10.5 | 49.1% | intergenic (+285/+451) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913_3_pae_tpiA | = 1097273 | 29 (0.230) | intergenic (+444/+292) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913_3_pae_tpiA | 59280 = | 138 (1.110) | 18 (0.170) | 16/228 | 10.5 | 14.3% | intergenic (+1/+407) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| ? | NC_000913_3_pae_tpiA | 59320 = | 95 (0.870) | intergenic (+41/+367) | yabP/rluA | pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent | |||||