New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 444558 =103 (1.040)11 (0.130) 11/234 9.8 11.2% intergenic (‑43/‑125) panE/yajQ 2‑dehydropantoate reductase, NADPH‑specific/phage Phi6 host factor, ATP/GTP binding protein
?NC_000913_3_pae_tpiA 444606 = 86 (1.000)intergenic (‑91/‑77) panE/yajQ 2‑dehydropantoate reductase, NADPH‑specific/phage Phi6 host factor, ATP/GTP binding protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 103 total aligned reads displayed.

TAAGGTTGCGGTACGCGCAGCCAGCCCTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGAGAGGAAAAGATGCCATCTTTCGATATTGTCTC  >  NC_000913_3_pae_tpiA/444409‑444705
                                                                                                                                                     |                                                                                                                                                   
tAAGGTTGCGGTACGCGCAGCCAGCCCTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCt                                                                                                                                                     >  1:233527/1‑150 (MQ=255)
    gTTGCGGTACGCGCAGCCAGCCCTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATcc                                                                                                                                                 <  2:316336/150‑1 (MQ=255)
     ttGCGGTACGCGCAGCCAGCCCTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATccc                                                                                                                                                >  4:111812/1‑150 (MQ=255)
       gCGGTACGCGCAGCCAGCCCTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATACGGCTATCCCtt                                                                                                                                              >  2:1083203/1‑150 (MQ=255)
         ggTACGCGCAGCCAGCCCTGAACTTCATGACCCTATTTGACAAGAGCTGTACGCAATTCCGGCCTTAGGGAATCTCATCCCAATTCGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTaa                                                                                                                                            <  3:485263/150‑1 (MQ=255)
               cgcAGCCAGCCCTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGc                                                                                                                                      >  1:324374/1‑150 (MQ=255)
                gcAGCCAGCCCTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCa                                                                                                                                     <  1:1036450/150‑1 (MQ=255)
                gcAGCCAGCCCTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCa                                                                                                                                     <  3:230218/150‑1 (MQ=255)
                    ccagccCTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCt                                                                                                                                 >  2:919937/1‑150 (MQ=255)
                        cccTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTg                                                                                                                             >  2:736718/1‑150 (MQ=255)
                         ccTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTGAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGc                                                                                                                            <  3:671220/150‑1 (MQ=255)
                         ccTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGc                                                                                                                            <  1:1082160/150‑1 (MQ=255)
                              aCTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTa                                                                                                                       <  2:675215/150‑1 (MQ=255)
                               cTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTAt                                                                                                                      >  2:474108/1‑150 (MQ=255)
                                ttCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTacg                                                                                                                     <  1:919937/150‑3 (MQ=255)
                                 tCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGc                                                                                                                    <  3:206401/150‑1 (MQ=255)
                                  cATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGca                                                                                                                   >  2:133065/1‑150 (MQ=255)
                                     gACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACaa                                                                                                                <  4:290492/150‑1 (MQ=255)
                                       tgaaatatGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAAtt                                                                                                              <  2:917686/143‑1 (MQ=255)
                                       cccTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAAtt                                                                                                              <  2:316390/150‑1 (MQ=255)
                                        ccTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTa                                                                                                             >  4:344951/1‑150 (MQ=255)
                                          tGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAg                                                                                                           <  1:308448/150‑1 (MQ=255)
                                            tttGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAggg                                                                                                         <  3:119853/150‑1 (MQ=255)
                                                  aaGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATatcc                                                                                                   >  3:648391/1‑147 (MQ=255)
                                                   aGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTc                                                                                                  >  1:712485/1‑150 (MQ=255)
                                                   aGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTc                                                                                                  <  2:916659/150‑1 (MQ=255)
                                                      gCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCCTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTg                                                                                               <  2:747618/150‑1 (MQ=255)
                                                        tGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAg                                                                                                           <  2:658447/136‑1 (MQ=255)
                                                        tGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAg                                                                                                           >  1:658447/1‑136 (MQ=255)
                                                        tGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGt                                                                                             <  2:420374/150‑1 (MQ=255)
                                                         gTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTAACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTGGCGACTATGCACAATTAAGGGATACGTCCTGGTg                                                                                            >  1:651575/1‑150 (MQ=255)
                                                          tAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGc                                                                                           >  2:215821/1‑150 (MQ=255)
                                                               cATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGAc                                                                                      >  3:610259/1‑150 (MQ=255)
                                                                  aaTTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGt                                                                                   <  1:369778/150‑1 (MQ=255)
                                                                   aTTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTc                                                                                  >  3:530237/1‑150 (MQ=255)
                                                                     tGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCgg                                                                                <  1:736718/150‑1 (MQ=255)
                                                                      gCCCTAAGGCCCCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGAACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGt                                                                               <  2:394334/150‑1 (MQ=255)
                                                                      gCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGt                                                                               <  1:714693/150‑1 (MQ=255)
                                                                       cccTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCTCCCGCAGCCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGtt                                                                              <  2:594151/150‑1 (MQ=255)
                                                                        ccTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTa                                                                             >  1:130292/1‑150 (MQ=255)
                                                                        ccTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTa                                                                             >  2:631523/1‑150 (MQ=255)
                                                                          tAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTAtt                                                                           >  3:70705/1‑150 (MQ=255)
                                                                          tAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTAtt                                                                           >  1:935358/1‑150 (MQ=255)
                                                                           aaGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTcc                                                                                                 >  1:199548/1‑127 (MQ=255)
                                                                           aaGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTcc                                                                                                 <  2:199548/127‑1 (MQ=255)
                                                                           aaGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTAttt                                                                          >  2:890654/1‑150 (MQ=255)
                                                                           aaGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACACGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATATGTCCTGGTGCAGGACTGTCGGTTAttt                                                                          <  1:824823/150‑1 (MQ=255)
                                                                             ggCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATtg                                                                                                                                         >  2:609613/1‑85 (MQ=255)
                                                                             ggCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATtg                                                                                                                                         <  1:609613/85‑1 (MQ=255)
                                                                             ggCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTaa                                                                        >  2:552259/1‑150 (MQ=255)
                                                                              gCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAAc                                                                       <  3:38704/150‑1 (MQ=255)
                                                                              gCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAAc                                                                       <  3:211782/150‑1 (MQ=255)
                                                                                 ccGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATGCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACttt                                                                    <  2:829274/150‑1 (MQ=255)
                                                                                          aaTACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGtatt                                                           <  1:577520/150‑1 (MQ=255)
                                                                                          aaTACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGtatt                                                           <  2:400226/150‑1 (MQ=255)
                                                                                            tACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGtattat                                                         <  4:34685/150‑1 (MQ=255)
                                                                                                gTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGAc                                                                                                                         <  1:2519/82‑1 (MQ=255)
                                                                                                gTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGAc                                                                                                                         >  2:2519/1‑82 (MQ=255)
                                                                                                    ttttCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCa                                                 >  1:1114551/1‑150 (MQ=255)
                                                                                                         aTTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCaaa                                            >  3:442023/1‑150 (MQ=255)
                                                                                                            gTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAAt                                         <  3:111812/150‑1 (MQ=255)
                                                                                                               cctcctCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGaa                                      >  1:873740/1‑150 (MQ=255)
                                                                                                                    tcACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGgag                                 >  4:12377/1‑150 (MQ=255)
                                                                                                                    tcACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGgag                                 >  3:368572/1‑150 (MQ=255)
                                                                                                                    tcACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGgag                                 >  2:520684/1‑150 (MQ=255)
                                                                                                                      aCCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGagag                               >  3:478978/1‑150 (MQ=255)
                                                                                                                      aCCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGagag                               >  2:84722/1‑150 (MQ=255)
                                                                                                                      aCCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGagag                               <  1:133065/150‑1 (MQ=255)
                                                                                                                        ccGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGaa                                      <  3:605630/141‑1 (MQ=255)
                                                                                                                        ccGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGaa                                      >  4:605630/1‑141 (MQ=255)
                                                                                                                        ccGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGAGAGGa                             >  1:1021833/1‑150 (MQ=255)
                                                                                                                        ccGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGAGAGGa                             >  3:56055/1‑150 (MQ=255)
                                                                                                                          gCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGTGAGAGGaaa                           >  3:78593/1‑150 (MQ=255)
                                                                                                                           cAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGAGAGGaaaa                          <  1:493560/150‑1 (MQ=255)
                                                                                                                             aCCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGAGAGGAAAAGa                        >  2:1077422/1‑150 (MQ=255)
                                                                                                                               cACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTAGGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGGAGGGAGAGGAAAAGATg                      <  2:712485/150‑1 (MQ=255)
                                                                                                                                aCTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGc                                                                                           <  1:979266/80‑1 (MQ=255)
                                                                                                                                aCTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGc                                                                                           >  2:979266/1‑80 (MQ=255)
                                                                                                                                aCTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGAGAGGAAAAGATGc                     <  1:363163/150‑1 (MQ=255)
                                                                                                                                 cTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGgaga                                >  4:138657/1‑138 (MQ=255)
                                                                                                                                  tCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAg                                                                                                           <  1:83387/62‑1 (MQ=255)
                                                                                                                                  tCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAg                                                                                                           >  2:83387/1‑62 (MQ=255)
                                                                                                                                      ggTGTTAAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTAAAAAAAAAAAAAAAAATGAAGGGAGAGGAAAAGATGCCATCtt               <  4:617999/150‑1 (MQ=255)
                                                                                                                                       gtgtTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGTCTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGCAGGGCAAGGAATAGATGCCATCttt              >  4:182732/1‑150 (MQ=255)
                                                                                                                                            cAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCg                                                                                 >  2:317067/1‑78 (MQ=255)
                                                                                                                                            cAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCg                                                                                 <  1:317067/78‑1 (MQ=255)
                                                                                                                                            cAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGc                                                  <  4:304314/109‑1 (MQ=255)
                                                                                                                                            cAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGc                                                  >  3:304314/1‑109 (MQ=255)
                                                                                                                                             aaTAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCAt                                                >  4:247927/1‑110 (MQ=255)
                                                                                                                                             aaTAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCAt                                                <  3:247927/110‑1 (MQ=255)
                                                                                                                                             aaTAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGaa                                      <  1:781402/120‑1 (MQ=255)
                                                                                                                                             aaTAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGaa                                      >  2:781402/1‑120 (MQ=255)
                                                                                                                                             aaTAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGAGAGGAAAAGATGCCATCTTTCGatat        >  3:171705/1‑150 (MQ=255)
                                                                                                                                               tAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGAGAGGAAAAGATGCCATCTTTCGATATTg      <  1:1668/150‑1 (MQ=255)
                                                                                                                                               tAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGAGAGGAAAAGATGCCATCTTTCGATATTg      >  4:355653/1‑150 (MQ=255)
                                                                                                                                                 aGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTCCGCATCAAAAATGAAGGGAGAGGAAAAGATGCCATCTTTCGATATTGtc    <  4:455991/150‑1 (MQ=255)
                                                                                                                                                  ggCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAg                                     >  2:644739/1‑116 (MQ=255)
                                                                                                                                                  ggCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAg                                     <  1:644739/116‑1 (MQ=255)
                                                                                                                                                  ggCTATCCCTTAATTGTGCATGCTGTTGCGACTACGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCATCTCATGAAAAATGAAGGGAGAGGAAAAGATGCCATCTTTCGATATTGtct   <  1:818284/150‑1 (MQ=255)
                                                                                                                                                   gCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGAAAGGAAAGGATGCCATCTTTCGATATTGtctc  <  4:70705/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
TAAGGTTGCGGTACGCGCAGCCAGCCCTGAACTTCATGACCCTGTTTGCAAAGTGCTGTAAGCCATAATTGCCCTAAGGCACCGCATCCCAATACGGTAATTTTCATTGTTCCTCCTCACCCGCAACCACTCCGGGTGTTCAATAAGGCTATCCCTTAATTGTGCATGCTGTTGCGACTATGCACAATTAAGGGATACGTCCTGGTGCAGGACTGTCGGTTATTTAACTTTGCGGGTATTATGCTTCGCATCAAAAATGAAGGGAGAGGAAAAGATGCCATCTTTCGATATTGTCTC  >  NC_000913_3_pae_tpiA/444409‑444705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.