New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 1429011 =126 (1.270)15 (0.160) 12/254 10.1 11.3% intergenic (+27/‑38) lomR/stfR pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein
?NC_000913_3_pae_tpiA 1429033 = 118 (1.270)intergenic (+49/‑16) lomR/stfR pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N‑ter deletion/Rac prophage; putative tail fiber protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 124 total aligned reads displayed.

ACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGA  >  NC_000913_3_pae_tpiA/1428884‑1429179
                                                                                                                                                      |                                                                                                                                                  
aCCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCtt                                                                                                                                                    >  1:1010970/1‑150 (MQ=255)
  ccgaccgaATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCtttt                                                                                                                                                  <  1:1042805/150‑1 (MQ=255)
     accgaATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTtg                                                                                                                                               >  3:266682/1‑150 (MQ=255)
      ccgaATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTtgt                                                                                                                                              <  3:472955/150‑1 (MQ=255)
      ccgaATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTtgt                                                                                                                                              >  2:359086/1‑150 (MQ=255)
       cgaATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTtgtg                                                                                                                                             <  4:32017/150‑1 (MQ=255)
       cgaATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTtgtg                                                                                                                                             >  1:251/1‑150 (MQ=255)
           tCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGt                                                                                                                                         >  3:350669/1‑150 (MQ=255)
                     ttGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCa                                                                                                                               <  1:528471/150‑1 (MQ=255)
                     ttGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTCATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCa                                                                                                                               <  4:24467/150‑1 (MQ=255)
                          atTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAatat                                                                                                                                   >  4:618628/1‑141 (MQ=255)
                          atTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAatat                                                                                                                                   <  3:618628/141‑1 (MQ=255)
                          atTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTaaa                                                                                                                          <  4:691728/150‑1 (MQ=255)
                               ttATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGAttt                                                                                                                     >  2:1080688/1‑150 (MQ=255)
                                    aaGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTtgt                                                                                                                                              <  4:382513/120‑1 (MQ=255)
                                    aaGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTtgt                                                                                                                                              >  3:382513/1‑120 (MQ=255)
                                     aGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGgtg                                                                                                               >  2:912322/1‑150 (MQ=255)
                                      ggCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGgtgt                                                                                                              >  1:916353/1‑150 (MQ=255)
                                       gCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCAGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTa                                                                                                             >  1:844541/1‑150 (MQ=255)
                                         cccGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACt                                                                                                           >  1:888701/1‑150 (MQ=255)
                                          ccGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTc                                                                                                                    >  1:234758/1‑140 (MQ=255)
                                          ccGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTc                                                                                                                    <  2:234758/140‑1 (MQ=255)
                                           cGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTggg                                                                                                                                           <  2:1026531/116‑1 (MQ=255)
                                           cGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTggg                                                                                                                                           >  1:1026531/1‑116 (MQ=255)
                                             gCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCTGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGaaa                                                                                                       >  1:782083/1‑150 (MQ=255)
                                                  ggCGACTGGCGCACTGACGGGTGCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTGTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGTCgg                                                                                                  >  2:369673/1‑150 (MQ=255)
                                                   gCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGGGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGGGGGGGGAATATGGCAGAAAAGATTTCAGGTGACCTGAAAGACGGc                                                                                                 >  1:773189/1‑150 (MQ=255)
                                                    cGACTTTCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGca                                                                                                <  2:217510/150‑1 (MQ=255)
                                                     gACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTGTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGcaa                                                                                               >  1:460985/1‑149 (MQ=255)
                                                      aCTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGca                                                                                                >  1:952867/1‑148 (MQ=255)
                                                      aCTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGca                                                                                                <  2:952867/148‑1 (MQ=255)
                                                        tGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGAt                                                                                                                       <  1:1090497/123‑1 (MQ=255)
                                                        tGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGAt                                                                                                                       >  2:1090497/1‑123 (MQ=255)
                                                        tGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAgg                                                                                            <  1:527334/150‑1 (MQ=255)
                                                        gtcgccACTGCCGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAgg                                                                                            <  4:668899/145‑1 (MQ=255)
                                                           cgcACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGaaa                                                                                         >  2:111983/1‑150 (MQ=255)
                                                            gcACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGaaaa                                                                                        >  2:63275/1‑150 (MQ=255)
                                                                 gACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGt                                                                                   >  1:551673/1‑150 (MQ=255)
                                                                  aCGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTa                                                                                  <  1:445514/150‑1 (MQ=255)
                                                                    ggTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTaaa                                                                                                                          <  2:453731/108‑1 (MQ=255)
                                                                    ggTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTaaa                                                                                                                          >  1:453731/1‑108 (MQ=255)
                                                                       ttCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGaa                                                                             <  3:572085/150‑1 (MQ=255)
                                                                        tCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAAc                                                                            <  2:299059/150‑1 (MQ=255)
                                                                         cATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAATACCGGTACAGAACt                                                                           >  2:599742/1‑150 (MQ=255)
                                                                         cATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACt                                                                           <  2:996433/150‑1 (MQ=255)
                                                                           tCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTgg                                                                                                                                            <  4:401317/83‑1 (MQ=255)
                                                                           tCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTgg                                                                                                                                            >  3:401317/1‑83 (MQ=255)
                                                                            cGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGca                                                                        >  3:98092/1‑150 (MQ=255)
                                                                            cGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGca                                                                        >  3:468999/1‑150 (MQ=255)
                                                                             gTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGaaa                                                                                                       >  2:936523/1‑118 (MQ=255)
                                                                             gTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGaaa                                                                                                       <  1:936523/118‑1 (MQ=255)
                                                                               gggTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACaa                                                                     <  2:200480/150‑1 (MQ=255)
                                                                                  tgtCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCCGGTGTACTGAAAGACGGCACAGGAAAACCGCTAGAGCACTGCACAATcc                                                                  >  4:8202/1‑150 (MQ=255)
                                                                                  tgtCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATcc                                                                  <  4:266682/150‑1 (MQ=255)
                                                                                  tgtCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATcc                                                                  <  2:127845/150‑1 (MQ=255)
                                                                                    tCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAg                                                                <  3:403573/150‑1 (MQ=255)
                                                                                    tCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAg                                                                <  1:834865/150‑1 (MQ=255)
                                                                                       gTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTg                                                             >  3:274626/1‑150 (MQ=255)
                                                                                        ttATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTgg                                                            >  4:156421/1‑149 (MQ=255)
                                                                                            aaGTTCTGGTTAGCCAGGTAACACAGGGATATGACAGCCCGCCGGTTCAGGC‑GGGCTTCATGGTGGGGGGAGTAAGACAGGAAAGATTTCAGGCGTACTGACAGACGGAACAGGCAAACCGGCACAGAACGGCACAACCCAGCGGAAGGc                                                        >  2:1017406/1‑150 (MQ=255)
                                                                                            aaGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAg                                                                                                                  <  2:510041/92‑1 (MQ=255)
                                                                                            aaGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAg                                                                                                                  >  1:510041/1‑92 (MQ=255)
                                                                                              gTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCaa                                                      <  1:902384/150‑1 (MQ=255)
                                                                                               ttCTGATTAGCCAGGTAATACAGTGTTATGACAGCCCGCCGGTTCAGCC‑GGGCTTTTTTGTGTGGTGAATATGGCAGTAAAGCTTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCaaa                                                     >  2:694151/1‑150 (MQ=255)
                                                                                               ttCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTATGTGGGGTTAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAACTGAAAGaaaa                                                     <  2:488795/150‑1 (MQ=255)
                                                                                                tCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCaaaa                                                    >  1:865670/1‑150 (MQ=255)
                                                                                                 cTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAAc                                                   <  1:663324/150‑1 (MQ=255)
                                                                                                  tGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAAc                                                                                       >  1:451578/1‑113 (MQ=255)
                                                                                                    aTTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAg                                                                                                                  <  1:661362/84‑1 (MQ=255)
                                                                                                    aTTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAg                                                                                                                  >  2:661362/1‑84 (MQ=255)
                                                                                                         ccAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAAc                                                                                       <  3:67366/106‑1 (MQ=255)
                                                                                                         ccAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAAc                                                                                       >  4:67366/1‑106 (MQ=255)
                                                                                                         ccAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGc                                           <  1:912322/150‑1 (MQ=255)
                                                                                                           cggTAAAACAGTGTTCAGACAGCCCGCCAGATCAGGCGGGGGAAGAGGGTGGGGT‑AATAAGGGAGTAAAGATTTCAGGGGAACTGACAGACGGCGCCGGAAAACTGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGcac                                         >  2:471678/2‑150 (MQ=255)
                                                                                                           aGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTa                                                                                                             >  3:109709/1‑82 (MQ=255)
                                                                                                           aGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTa                                                                                                             <  4:109709/82‑1 (MQ=255)
                                                                                                                 cacaGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACggt                                   <  3:58037/150‑1 (MQ=255)
                                                                                                                  acaGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACggtg                                  >  2:596587/1‑150 (MQ=255)
                                                                                                                     gtgtTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACggtggtg                               <  1:1017406/150‑1 (MQ=255)
                                                                                                                     gtgtTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACggtggtg                               <  2:551673/150‑1 (MQ=255)
                                                                                                                     gtgtTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACggtggtg                               <  2:888701/150‑1 (MQ=255)
                                                                                                                        ttATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGgtggtggtg                            >  1:1101644/1‑150 (MQ=255)
                                                                                                                        ttATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGgtggtggtg                            >  1:1101656/1‑150 (MQ=255)
                                                                                                                          aTGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAata                                                                                                                                    >  1:653724/1‑44 (MQ=255)
                                                                                                                          aTGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGaa                          <  1:1067886/150‑1 (MQ=255)
                                                                                                                          aTGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGaa                          <  2:916353/150‑1 (MQ=255)
                                                                                                                              cAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCaaag                                                    >  1:722613/1‑119 (MQ=255)
                                                                                                                              cAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCaaaa                                                    <  2:722613/120‑1 (MQ=255)
                                                                                                                               aacccGCCGGTTCAGGG‑GGGCTTTTTTTTGTGGAAAAATAGGCCGAAAAGATTGCAGTTGAACGGAAAGACGGCACAGGAAAACCGGTACACAACTGCAAAATCCTGCTGAAAGCAAAACGTAACTGCACTACTCTGGTGGTGAacctgc                     <  2:460985/148‑5 (MQ=255)
                                                                                                                                 cccGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGa                                                                                                         >  4:198024/1‑64 (MQ=255)
                                                                                                                                 cccGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGa                                                                                                         <  3:198024/64‑1 (MQ=255)
                                                                                                                                 cccGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGccg                   >  4:609999/1‑148 (MQ=255)
                                                                                                                                 cccGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTg                   <  1:126813/150‑1 (MQ=255)
                                                                                                                                       ggTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCCGGCCTCa             <  3:609999/150‑1 (MQ=255)
                                                                                                                                            aGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGaaaa        <  1:111983/150‑1 (MQ=255)
                                                                                                                                                 gggCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCg    <  2:121543/150‑1 (MQ=255)
                                                                                                                                                  ggCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTGCAGGTGTACTAAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCgg   <  1:369673/150‑1 (MQ=255)
                                                                                                                                                  ggCTGTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCgg   <  2:308866/150‑1 (MQ=255)
                                                                                                                                                   gCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGa  <  2:773189/150‑1 (MQ=255)
                                                                                                                                                   gCTGTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGAACACCGGTGGTGAGTAACGCGCTGGCCTCAGAAAATCCGGa  <  2:844541/150‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                  
ACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCCCCGGCAGTGGCGACTGGCGCACTGACGGTTTCATCGTGGGTGTCGGTTATAAGTTCTGATTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGC‑GGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTTCAGGTGTACTGAAAGACGGCACAGGAAAACCGGTACAGAACTGCACAATCCAGCTGAAAGCAAAACGTAACAGCACCACGGTGGTGGTGAACACGCTGGCCTCAGAAAATCCGGA  >  NC_000913_3_pae_tpiA/1428884‑1429179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.