New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 2133431NA (NA)7 (0.180) 5/264 4.8 NA intergenic (‑34/+59) wcaA/wzc putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase
?NC_000913_3_pae_tpiA = 2133461 NA (NA)noncoding (30/34 nt) REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GCAAAACCGATTTTATTGCCCGAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGTTTTGCTCAAAGCG  >  NC_000913_3_pae_tpiA/2133313‑2133609
                                                                                                                                                    |                                                                                                                                                    
gcAAAACCGATTTTATTGCCCGAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                                                                                                      <  1:613212/149‑1 (MQ=255)
   aaaCCGATTTTATTGCCCGAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATGGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCCGCTTATGAGCTGGTTCGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                                                                                                   <  2:237668/149‑1 (MQ=255)
     aCCGATTTTATTGCCCGAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACg                                                                                                                                                 <  1:636954/149‑1 (MQ=255)
                  cccGAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAAt                                                                                                                                    >  2:90191/1‑149 (MQ=255)
                           ccAGTTGTTGGCGGTTCCAGGTCGTCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTAGCCGGCCTACGTGGCGGTGCGAATGCAGGcgtc                                                                                                                           <  2:582480/149‑1 (MQ=255)
                           ccAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATAAGGCGTTCACGCCGCATCCGGcaa                                                                                                                                                    >  2:567854/1‑122 (MQ=38)
                                     gCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCTGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGc                                                                                                                 >  2:448003/1‑149 (MQ=255)
                                       ggTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCTCGTCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCAt                                                                                                               >  1:669836/1‑149 (MQ=255)
                                             aGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACt                                                                                                         >  1:580506/1‑149 (MQ=255)
                                                    cATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTAtattc                                                                                                  <  1:24176/149‑1 (MQ=255)
                                                      tataGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTAtt                                                                                                                     <  1:191945/128‑1 (MQ=255)
                                                      tataGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTAtt                                                                                                                     >  2:191945/1‑128 (MQ=255)
                                                          gATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTAtattcgtattc                                                                                            >  1:303591/1‑149 (MQ=255)
                                                              gagaTCTGTGGAGTGTTTTTCATAGGTTGTTCTCCTGGCTTAGGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACGGGTCGGTGCGAATGCAGGCGTCGTTATTGCGCATCCGACTTATATTCGTATTCGTaa                                                                                        <  2:79701/149‑1 (MQ=38)
                                                                gaTCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGAATTATATTCGTATTCGTAATa                                                                                      >  2:33842/1‑149 (MQ=255)
                                                                 aTCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTCTTTCGCATCCGCCTTATCTTCGTATTCGTAATAg                                                                                     >  2:347297/1‑149 (MQ=255)
                                                                 aTCAGCGGATTGTTTTTCATAGGGTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGGTGCGGCGTGAACTCCTTATCCGGCCTACGGGGCGGTGCGCATGCAAGCGTCGTTATTTCACATCCGACTTATAATCGGATTCGTAAtgg                                                                                     >  2:402452/1‑147 (MQ=255)
                                                                        gATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAAt                                                                              >  1:539577/1‑149 (MQ=255)
                                                                        gATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTCAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAAt                                                                              >  1:599999/1‑149 (MQ=255)
                                                                          ttGTTTTTCATAGGTTGTTCTCCCGGTTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATcc                                                                            <  1:164809/149‑1 (MQ=255)
                                                                          ttGGTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATcc                                                                            <  1:11401/149‑1 (MQ=255)
                                                                             tttttCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGTTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGa                                                                         <  1:478969/149‑1 (MQ=255)
                                                                                ttaaTAGGTTGTCCCCCCGTCTTATGGGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATAc                                                                      <  1:179089/146‑1 (MQ=39)
                                                                                   aTAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATAcgcg                                                                   >  1:170701/1‑149 (MQ=255)
                                                                                   aTAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATAcgcc                                                                   >  2:683613/1‑148 (MQ=255)
                                                                                    tAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACgcgc                                                                  >  2:552986/1‑149 (MQ=255)
                                                                                    tAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTAGTAATAGACATAATACTGATAcgcga                                                                  >  1:102169/1‑148 (MQ=255)
                                                                                      ggTTGTTCTCCCGGATTATGAGCTGGGTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTg                                                                <  1:582245/149‑1 (MQ=255)
                                                                                          tttCTCTCGGGTTAGTAGGTGGGTTGCTTGCCGGATGCGGCGTGAACGCCTTACCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGgcgc                                                            <  2:291538/148‑1 (MQ=39)
                                                                                              tcCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCgcggcg                                                        >  2:356777/1‑149 (MQ=255)
                                                                                                ccGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCCTAATCCTGTTACGCGCTGGCGGGGCGGa                                                      >  1:487840/1‑149 (MQ=255)
                                                                                                ccGGCTTATGAGCTGGTTTGCTTGCCGGAAGCGGCGTGAACGGCTTATCCGGCCTACGGGGCGGTTCGAATTCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGa                                                      >  1:103729/1‑149 (MQ=255)
                                                                                                 cGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACCCGCTGGCGCGGCGGaa                                                     >  2:537892/1‑149 (MQ=255)
                                                                                                     ttATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGCCTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATg                                                 >  2:32748/1‑149 (MQ=255)
                                                                                                            cTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCa                                          <  1:459066/149‑1 (MQ=255)
                                                                                                            cTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCa                                          <  1:552986/149‑1 (MQ=255)
                                                                                                               gTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGaa                                       <  1:23297/149‑1 (MQ=255)
                                                                                                                tttGCGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAAt                                      <  1:347297/149‑1 (MQ=255)
                                                                                                                  tgcttgcCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCa                                    <  2:303591/149‑1 (MQ=255)
                                                                                                                              gcggctTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCg                        <  1:581880/149‑1 (MQ=255)
                                                                                                                              gcggcgTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTACGAATCACCCCTTTCACCg                        <  2:599999/149‑1 (MQ=255)
                                                                                                                                       aCGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGt               >  2:649850/1‑149 (MQ=255)
                                                                                                                                         gCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCCttt             >  2:637160/1‑149 (MQ=255)
                                                                                                                                            ttactcGGCCGTCGGGGCGGTGCGAATGCATGCGTCTTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAACCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGTTTTGc          <  2:446460/144‑1 (MQ=255)
                                                                                                                                            ttATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGTTTTGc          >  1:362588/1‑149 (MQ=255)
                                                                                                                                                 cGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTAGTATTCGTAATAGCCATAATCCTGATACGCGCTGGAGCCACGAATTATGGAGTTCAGAATCACCCCTTTCTCCGGAATACCGTTGTGCTCaaa     >  1:628956/1‑149 (MQ=255)
                                                                                                                                                  ggCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGTTTTGCTCAAAg    <  1:90191/149‑1 (MQ=255)
                                                                                                                                                    ccTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGTTTTGCTCAAAGCg  >  1:419849/1‑149 (MQ=255)
                                                                                                                                                    ccTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCAGAATACCGCTTTTCTCAAAGCg  >  1:507134/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GCAAAACCGATTTTATTGCCCGAATCGCCAGTTGTTGGCGGTTCCAGGTCGGCATATAGATTGAGATCAGCGGATTGTTTTTCATAGGTTGTTCTCCCGGCTTATGAGCTGGTTTGCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGGCGGTGCGAATGCAGGCGTCGTTATTTCGCATCCGACTTATATTCGTATTCGTAATAGCCATAATCCTGATACGCGCTGGCGCGGCGGAAGATGGAGTTCAGAATCACCCCTTTCACCGGAATACCGTTTTGCTCAAAGCG  >  NC_000913_3_pae_tpiA/2133313‑2133609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.