New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3741088	NA (NA)	5 (0.130)	5/258	4.7	NA	intergenic (+130/+21)	avtA/ysaA	valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component
	?	NC_000913_3_pae_tpiA	= 3741092	NA (NA)					intergenic (+134/+17)	avtA/ysaA	valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase/putative hydrogenase, 4Fe‑4S ferredoxin‑type component
Rejected: Coverage evenness skew score above cutoff.

GCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCACTTAATCGC  >  NC_000913_3_pae_tpiA/3740944‑3741240                                                                                                                                                     |                                                                                                                                                     gCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTgaga                                                                                                                                                      <  2:161225/149‑1 (MQ=255)   tGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGaaa                                                                                                                                                    >  2:409811/1‑149 (MQ=255)            cTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCAGCGTTGAGAAACGCCGaaaa                                                                                                                                           >  1:433824/1‑149 (MQ=255)             tAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGaaaa                                                                                                                                          >  1:287493/1‑149 (MQ=255)             tAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGaaaa                                                                                                                                          >  2:53218/1‑149 (MQ=255)                aaaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt                                                                                                                                       <  1:53218/149‑1 (MQ=255)                        tGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACa                                                                                                                               >  1:685350/1‑149 (MQ=255)                              gcTACGCTTATCAGGCCTACATGATTTCTGCAATATCTTGAAGTTGGAGGGATTTGTACGCCGGCTAAGGCGTTTACGCCGCATCTGGCATAAACAACGCGCGCTGTTTCCGCCTTTAGGAACGCCGGACAAACTTTCAAACAGgctgc                                                                                                                         >  1:321692/1‑149 (MQ=18)                                tACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCg                                                                                                                                               <  2:365401/125‑1 (MQ=255)                                tACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCg                                                                                                                                               >  1:365401/1‑125 (MQ=255)                                        tCAGGCCTACATGATTTCTGCAATATATTCCCGTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAAGCCGCATCTGGCATAACCAAAGCGCACTGTTCCGGCGATGAGAAACGACGGAAAACGTTTCAACCACGCTGCTGCCGTAGcc                                                                                                               >  2:225731/1‑149 (MQ=25)                                          aGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGa                                                                                                             <  1:570653/149‑1 (MQ=255)                                           ggCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt                                                                                                                                       <  1:384232/122‑1 (MQ=255)                                           ggCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGt                                                                                                                                       >  2:384232/1‑122 (MQ=255)                                           ggCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGAt                                                                                                            <  1:466448/149‑1 (MQ=255)                                               tACATGATTTCTGCAATATATTGAATTTGGAAGAATTTATAGGCCGGATAAGGCGTTTACGCCGCACCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGGGAAACGCCGGAAAACGTTTCAAACAAGCTGCTGCCGTACCCAATGCCg                                                                                                        >  2:115924/1‑149 (MQ=37)                                                          tGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCAc                                                                                                  <  1:210603/144‑1 (MQ=255)                                                          tGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCAc                                                                                                  >  2:210603/1‑144 (MQ=255)                                                                 tatTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATc                                                                                      <  1:409811/149‑1 (MQ=255)                                                                   ttGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCa                                                                                    >  1:223066/1‑149 (MQ=255)                                                                            gaagaaTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAgg                                                                                                                             <  1:22518/99‑1 (MQ=255)                                                                            gaagaaTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAgg                                                                                                                             >  2:22518/1‑99 (MQ=255)                                                                            gaagaaTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGTTGCCGTAGCCAATGCCGCTGCACTTTCTCGAAAACCATACACTACa                                                                           >  1:16658/1‑149 (MQ=38)                                                                               gaaTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACg                                                                        >  2:313085/1‑149 (MQ=255)                                                                                  tttGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACGAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCt                                                                     >  2:545639/1‑149 (MQ=255)                                                                                  tttGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCt                                                                     >  1:381510/1‑149 (MQ=255)                                                                                       aGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTATCCGGTCTGTACATCCATGCACTGCAACGCCTTTGTc                                                                <  2:685350/149‑1 (MQ=38)                                                                                         gCCGGTTAAGTCGTTTAAGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGCAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCgg                                                              <  1:487153/149‑1 (MQ=255)                                                                                           cGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCCCTGCAACGCCTTTGTCGGGc                                                            >  1:48501/1‑149 (MQ=255)                                                                                            ggATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCa                                                           <  2:568411/149‑1 (MQ=255)                                                                                            ggATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCa                                                           <  2:705189/149‑1 (MQ=255)                                                                                              aTAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAgg                                                         <  1:313085/149‑1 (MQ=255)                                                                                               tAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGc                                                        <  2:287493/149‑1 (MQ=255)                                                                                               tAAGCCGTTTACCCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGc                                                        <  1:358644/149‑1 (MQ=255)                                                                                                 agtcttttACGCCGCATCTAGCATAAACAAATCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTTCCGTATCCTATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCtt                                                      <  2:662262/144‑1 (MQ=255)                                                                                                   gCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCACGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCa                                                    >  2:451672/1‑149 (MQ=255)                                                                                                   gCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAAAAGGCTGCTGCCGTAACCGATGAGGAAGACGATGTTCAACACCCCTGCACTGCTACGCGTTTGTCGGGCAGGCTTCa                                                    >  1:163780/1‑149 (MQ=255)                                                                                                                          aaCAAAGCGCACTGTTCCGGCGTTGACAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCACCACAGGCCGGTCCCGTCTCCCg                             >  2:587561/1‑149 (MQ=255)                                                                                                                           aCAAAGCGCCCTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCCGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGa                            <  2:35266/149‑1 (MQ=255)                                                                                                                           aCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGa                            >  1:106504/1‑149 (MQ=255)                                                                                                                             aaaGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATg                          >  1:141797/1‑149 (MQ=255)                                                                                                                               aGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCAGATGCCGCTGCGCTTTCTCGACATCCATGCACTGCAAAGCCTTTGTCGGGCAGGATTCAACACCGGACGGTCCGGTTACCCgcttcc                        >  2:54149/1‑144 (MQ=255)                                                                                                                                           cGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCCTCTCCCGATGCCAGCACAGATCGc            >  2:275140/1‑149 (MQ=255)                                                                                                                                            ggCGTTAAGAAACGCCGGAAAACGTTTCAAACAGACTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCa           <  1:609378/149‑1 (MQ=255)                                                                                                                                            ggCGTGGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCa           <  2:210692/149‑1 (MQ=255)                                                                                                                                               gTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCACtt        >  2:223189/1‑149 (MQ=255)                                                                                                                                                     aaaCGCTGGAAAACCGTTCAAACAGGCTGAGGCCGTAGCCTATGCCGCTGCACTTCCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGTTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCACTTAATCGc  <  2:219768/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCACTTAATCGC  >  NC_000913_3_pae_tpiA/3740944‑3741240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.