Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_pae_tpiA	223848–224782	225490–224891	110–1643	14 [12]	[13] 14	[rrsH]–ileV	[rrsH],ileV

AAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAG  >  NC_000913_3_pae_tpiA/223699‑223887                                                                                                                                                     |                                         aaaTGAATACCAAGTCTCAAGAGTGAACAGGTAATTCCTTACAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGga                                          <  1:421675/149‑1 (MQ=17) aaaTGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGga                                          <  2:545834/149‑1 (MQ=32)    tGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGgaaga                                       <  2:524177/149‑1 (MQ=32)          ccAAGTCTCAAGAGTGAACACGTAATTCATTACAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAgcttg                                 <  1:682739/149‑1 (MQ=32)           cAAGTCTCAAGAGTGAACACGTAATTCATTACAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAgcttgc                                >  2:567528/1‑149 (MQ=32)               tctcAAGAGTGAACACGTAATTCATTACAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGcttct                            <  1:567528/149‑1 (MQ=32)                   aaGAGTGAACACGTAATTCATTACAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGc                        >  1:498400/1‑149 (MQ=32)                    agagTGAACACGTAATTCATTACAAAGTTTAATACTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCGGGCCTAACACATGCAAGTCGAAAGGTTACAGGATGAAGCTTGCTTCTTTGCt                       >  1:274796/1‑149 (MQ=11)                             acGTAATGCAATACAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCAGGGCTCAGAGTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTgg              <  2:274796/149‑1 (MQ=255)                                    tCATTACAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACgg       >  1:269085/1‑149 (MQ=32)                                    tCATTACAAAGGTTAATTCTTTGAGAATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTTAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACCGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACgg       <  2:404116/149‑1 (MQ=255)                                    tCAATACAAAGTTTAATTCTCTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACATGTGCAAGTCGAACGTTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACgg       <  2:276472/149‑1 (MQ=11)                                      aTTACAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGt     <  2:539199/149‑1 (MQ=32)                                         aCAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCCAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAg  >  1:256771/1‑149 (MQ=17)                                                                                                                                                     |                                         AAATGAATACCAAGTCTCAAGAGTGAACACGTAATTCATTACAAAGTTTAATTCTTTGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAG  >  NC_000913_3_pae_tpiA/223699‑223887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑