| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 225685 | 233 (1.130) | 34 (0.170) | 27/230 | 15.2 | 13.3% | intergenic (+110/‑74) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | = 3943636 | NA (NA) | intergenic (+126/‑68) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/225557‑225685‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacaaCTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAA < NC_000913_3_pae_tpiA/3943636‑3943488 ATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAAATTGAAACACTGAACAACTTTCATTGTT < 4:1348521/141‑1ATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAAATTGAAACACTGAACAACTTTCATTGTT > 3:1348521/1‑141ATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCATTGTT < 4:1348515/140‑1ATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCATTGTT > 3:1348515/1‑140 CTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCATTGTTCAGT < 2:1178566/133‑1 CTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCATTGTTCAGT > 1:1178566/1‑133 GTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAA < 2:1003242/96‑1 GTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAA > 1:1003242/1‑96 AATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCT > 1:615958/1‑126 AATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCT < 2:615958/126‑1 AAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAA < 2:144779/91‑1 AAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAA > 1:144779/1‑91 AAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACCGAACAACTTTCGTTGTTCAGTGTTTCAA < 2:31887/113‑1 AAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACCGAACAACTTTCGTTGTTCAGTGTTTCAA > 1:31887/1‑113 AATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAA > 1:1028906/1‑85 AATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAA < 2:1028906/85‑1 TTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCGTTGTTCAGT < 3:271231/98‑1 TTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCGTTGTTCAGT > 4:271231/1‑98 TTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTG < 1:1309555/78‑1 TTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTG > 2:1309555/1‑78 TCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTG < 3:281176/77‑1 TCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTG > 4:281176/1‑77 TGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCGTTGTTCAGTG > 1:1737338/1‑92 TGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCGTTGTTCAGTG < 2:1737338/92‑1 ACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAAC < 3:647069/74‑1 ACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAAC > 4:647069/1‑74 AAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATTTTC > 3:49796/1‑93 AAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCGTTGTTCAGTGTTTCAATTTTC < 4:49796/93‑1 TGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCGTTGTTCAGTG > 2:1833942/1‑73 TGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACTTTCGTTGTTCAGTG < 1:1833942/73‑1 AGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAA > 2:1570285/1‑49 AGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAA < 1:1570285/49‑1 TTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACCGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCA < 1:85326/77‑1 TTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACCGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCA > 2:85326/1‑77 TCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACCGAACAACTTTCGTTGTTCAGT > 4:815419/1‑59 TCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACCGAACAACTTTCGTTGTTCAGT < 3:815419/59‑1 ggatcatATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACGAAAGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTT < 4:658131/143‑1 AAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAACGAAAGTTGTTCAGTGTTTCAATTTTCGGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTC > 4:798905/1‑150 AAGCTG‑AAAATTGAAACACTGAACAACGAAAGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCA > 2:1916116/1‑150 AGCTG‑AAAATTGAAACACTGAACAACGAAAGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAA < 1:1916116/150‑1 TG‑AAAATTGAAACACTGAACAACGAAAGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAG > 1:456527/1‑144 TG‑AAAATTGAAACACTGAACAACGAAAGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAG < 2:456527/144‑1 TTGAAACACTGAACAACGAAAGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGC > 2:1083069/1‑114 TTGAAACACTGAACAACGAAAGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGC < 1:1083069/114‑1 AACACTGAACAACGAAAGTTGTTCGGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTG > 3:1275692/1‑98 AACACTGAACAACGAAAGTTGTTCGGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTG < 4:1275692/98‑1 GAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGCGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGAT > 3:1317396/1‑150 GAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGA < 1:594790/93‑1 GAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGA > 2:594790/1‑93 AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATT < 2:121919/150‑1 AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATT > 1:873197/1‑150 AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATT > 1:1221571/1‑150 AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATT > 1:1390227/1‑150 AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATT > 2:1748466/1‑150 AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATACTAAGGCAGGTGACTTTCACTCACAAACCA > 2:237633/1‑126 AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATACTAAGGCAGGTGACTTTCACTCACAAACCA < 1:237633/126‑1 AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAA < 2:2355143/52‑1 AACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAA > 1:2355143/1‑52 ACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC > 2:2436726/1‑150 ACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTC < 4:1584757/150‑1 ACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGGGGCGTCCCCTAGGGGATTC < 1:634136/150‑1 ACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGT < 4:1492225/106‑1 ACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGT > 3:1492225/1‑106 ACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAA < 2:1171174/68‑1 ACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAA > 1:1171174/1‑68 ACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAA > 4:543894/1‑52 ACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAA < 3:543894/52‑1 ACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTA > 2:2030993/1‑50 ACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTA < 1:2030993/50‑1 tACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGG < 2:2344362/141‑1 AACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGG > 1:2344362/1‑142 ACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAA < 2:85538/150‑1 ACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAA < 1:482886/150‑1 ATCCCGCATAGCTCCACCATCTCTGTAGTGGTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTG‑AAAATTGAAACACTGAACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/225557‑225685‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacaaCTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATCTCAAACATCACCCGAAGATGAGTTTTGAGATATTAAGGCAGGTGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAA < NC_000913_3_pae_tpiA/3943636‑3943488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |