New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 1757082 =34 (0.160)192 (0.930) 120/242 0.4 85.0% coding (1385/1413 nt) pykF pyruvate kinase I
?NC_000913_3_pae_tpiA = 2102943 NA (NA)intergenic (‑32/+1) insH1/wbbL IS5 transposase and trans‑activator/pseudogene, lipopolysaccharide biosynthesis protein

Only 100 of 406 total aligned reads displayed.

AAAGGCGTTGTGCCGCAGCTTGTTAAAGAGATCACTTCTACTGATGATTTCTACCGTCTGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAAAATCAAATCGGATTTCACTATATAATCTCACTTTATCT  >  NC_000913_3_pae_tpiA/1756934‑1757231
                                                                                                                                                    |                                                                                                                                                     
cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCt                                                                                                                                                      >  3:1595441‑M1/149‑150 (MQ=255)
cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCt                                                                                                                                                      >  1:311549‑M1/149‑150 (MQ=255)
  aGGCGTTGTGCCGCAGCTTGTTAAAGAGATCACTTCTACTGATGATTTCTACCGTCTGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCActactat                                                                                                                                                    <  1:739819/150‑2 (MQ=255)
       agaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCg                                                                                                                                               >  1:1711068‑M1/142‑150 (MQ=255)
        gaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGc                                                                                                                                              <  1:1118713‑M1/10‑1 (MQ=255)
            ccGCAGCTTGTTAAAGAGATCACTTCTACTGATGATTTCTACCGTCTGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCactact                                                                                                                                                      <  3:692659/138‑1 (MQ=255)
              gCAGCTTGTTAAAGAGATCACTTCTACTGATGATTTCTACCGTCTGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaa                                                                                                                                        >  2:456799‑M2/1‑138 (MQ=255)
              ctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatggctcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGt                                                                                                                                        >  4:679767‑M1/135‑150 (MQ=255)
                  tttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCAc                                                                                                                                    >  4:1152102‑M1/131‑150 (MQ=255)
                      ttAAAGAGATCACTTCTACTGATGATTTCTACCGTCTGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAACACCGCATCTGTTCACGTcc                                                                                                                                >  2:2098016/1‑150 (MQ=255)
                      ttAAAGAGATCACTTCTACTGATGATTTCTACCGTCTGGGTAAAGAACTGGCTCTGCAGAGAGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggg                                                                                                                                <  1:1275642‑M2/150‑21 (MQ=255)
                         tctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGt                                                                                                                             >  2:189866‑M1/124‑150 (MQ=255)
                             gaTCACTTCTACTGATGATTTCTACCGTCTGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattc                                                                                                                         >  3:296718‑M2/1‑123 (MQ=255)
                              aTCACTTCTACTGATGATTTCTACCGTCTGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTGGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTaa                                                                                                                                                    <  2:1811321/122‑1 (MQ=255)
                                gcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTg                                                                                                                      <  4:1208375‑M1/34‑1 (MQ=255)
                                cACTTCTACTGATGATTTCTACCGTCTGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttc                                                                                                                      >  1:2441314‑M2/1‑120 (MQ=255)
                                 aCTTCTACTGATGATTTCTACCGTCTGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAACACCGc                                                                                                                                              <  4:1379020/125‑1 (MQ=255)
                                     tactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCtttt                                                                                                                 >  1:1180012‑M1/112‑150 (MQ=255)
                                         gctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAat                                                                                                                          >  1:438840‑M1/108‑137 (MQ=255)
                                          ctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTaa                                                                                                                           >  2:620599‑M1/107‑135 (MQ=255)
                                          ctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTaa                                                                                                                           <  1:620599‑M1/29‑1 (MQ=255)
                                                 tCTACCGTCTGGGTAAAGAACGGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACGAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat                                                                                                     >  1:2633708‑M2/1‑103 (MQ=255)
                                                    tgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGta                                                                                                  <  2:1238885‑M1/54‑1 (MQ=255)
                                                    aCCGTCTGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttc                                                                                                  <  2:1090395‑M2/150‑51 (MQ=255)
                                                        ggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAAttt                                                                                                     >  2:649989‑M1/93‑143 (MQ=255)
                                                          tGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcg                                                                                                                   <  4:192788‑M2/127‑34 (MQ=255)
                                                          tGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcg                                                                                                                   >  3:192788‑M2/1‑94 (MQ=255)
                                                           gggTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctc                                                                                                                    <  2:805358‑M2/125‑33 (MQ=255)
                                                           gggTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctc                                                                                                                    >  1:805358‑M2/1‑93 (MQ=255)
                                                           gaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGaa                                                                                           >  3:749599‑M1/90‑150 (MQ=255)
                                                            ggTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc                                                                                          <  2:1564309‑M2/150‑59 (MQ=255)
                                                             gTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAACACCGCATCTGtt                                                                                                                                       <  2:1964148/104‑1 (MQ=255)
                                                              tAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcat                                                                                        >  2:387003‑M2/1‑90 (MQ=255)
                                                                 aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCg                                                                                                                                               <  1:1653814‑M1/9‑1 (MQ=255)
                                                                 aGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtg                                                                                                                                            <  2:688125‑M2/95‑9 (MQ=255)
                                                                 aGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtg                                                                                                                                            >  1:688125‑M2/1‑87 (MQ=255)
                                                                  agttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTg                                                                                                                                         >  1:1582607‑M1/83‑97 (MQ=255)
                                                                   aaCTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattctt                                                                                                                       >  4:1289204‑M2/1‑85 (MQ=255)
                                                                       atgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATgg                                                                               <  4:80234‑M1/73‑1 (MQ=255)
                                                                        gCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg                                                                              <  4:1023491‑M2/150‑71 (MQ=255)
                                                                         ctctGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgc                                                                                                                                           <  1:2263171‑M2/88‑10 (MQ=255)
                                                                            tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCt                                                                                                                               >  2:1502226‑M1/73‑97 (MQ=255)
                                                                            tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCt                                                                          <  3:605166‑M1/78‑1 (MQ=255)
                                                                            tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCt                                                                          <  1:575794‑M1/78‑1 (MQ=255)
                                                                            tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCt                                                                          <  1:2296633‑M1/78‑1 (MQ=255)
                                                                             gCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttt                                                                         >  1:947282‑M2/1‑75 (MQ=255)
                                                                               agagCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt                                                                       >  2:769264‑M2/1‑73 (MQ=255)
                                                                               agagCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt                                                                       >  1:646868‑M2/1‑73 (MQ=255)
                                                                               agagCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgatttttt                                                                       >  2:2271692‑M2/1‑73 (MQ=255)
                                                                                 atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCtt                                                                                                                   <  1:1353343‑M1/37‑1 (MQ=255)
                                                                                   gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTc                                                                                                                                      >  1:2224524‑M1/66‑83 (MQ=255)
                                                                                   gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTc                                                                                                                                      <  2:2224524‑M1/18‑1 (MQ=255)
                                                                                      tCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcag                                                                                                         >  1:1323947‑M2/1‑66 (MQ=255)
                                                                                       cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGCTGGGCGCTTTTtttattta                                                               <  1:1481267‑M1/89‑1 (MQ=255)
                                                                                         tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAAt                                                             <  2:2313642‑M1/91‑1 (MQ=255)
                                                                                            acacaAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCtt                                                                         >  3:138598/1‑135 (MQ=255)
                                                                                            acacaAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATGTGTATATCGAAGCGCCCTGAt                                                                                 <  3:380895/127‑1 (MQ=255)
                                                                                               caAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcctt                                                       >  3:898202‑M2/1‑57 (MQ=255)
                                                                                               atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCt                                                                                                                                          <  3:477049‑M1/14‑1 (MQ=255)
                                                                                               atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTtgt                                                                                                               <  3:917216‑M1/41‑1 (MQ=255)
                                                                                                aaaGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt                                                                                           >  4:321138‑M2/1‑56 (MQ=255)
                                                                                                       aCGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagc                                               >  4:163870‑M2/1‑49 (MQ=255)
                                                                                                         gTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCactact                                                                                                                                                      <  3:1462641/45‑1 (MQ=255)
                                                                                                         gTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttga                                                                                  <  1:2534060‑M2/113‑67 (MQ=255)
                                                                                                           gacaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGt                                                                                                   >  3:1124223‑M1/42‑94 (MQ=255)
                                                                                                            acaaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATaa                                          <  2:127765‑M1/110‑1 (MQ=255)
                                                                                                             caaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATaaa                                         >  3:233622‑M1/40‑150 (MQ=255)
                                                                                                             caaacatgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATaaa                                         >  2:2619471‑M1/40‑150 (MQ=255)
                                                                                                                ttATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggt                                                                                                                                             >  4:421779‑M2/1‑40 (MQ=255)
                                                                                                                  atgatctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGGAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAaaatc                                    >  3:102178‑M1/35‑150 (MQ=255)
                                                                                                                  aTGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc                                                                  >  1:491503‑M2/1‑38 (MQ=255)
                                                                                                                  aTGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc                                                                  <  2:491503‑M2/120‑83 (MQ=255)
                                                                                                                  aTGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttc                                                                                                                      <  3:1424887‑M2/68‑31 (MQ=255)
                                                                                                                  aTGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttc                                                                                                                      >  4:1424887‑M2/1‑38 (MQ=255)
                                                                                                                   tGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccg                                   <  3:1304434‑M2/150‑114 (MQ=255)
                                                                                                                     gTTTCTGGTGCACTGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtt                                 <  2:576649‑M2/150‑116 (MQ=255)
                                                                                                                      tctcatatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAaaatcaaat                                <  1:2090557‑M1/120‑1 (MQ=255)
                                                                                                                          atatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAAAATCAAATCGGa                            <  2:141824‑M1/124‑1 (MQ=255)
                                                                                                                          atatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAAAATCAAATCGGa                            >  2:2514140‑M1/27‑150 (MQ=255)
                                                                                                                           tatcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGa                                                                                  <  2:1350426‑M1/70‑1 (MQ=255)
                                                                                                                             tcagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAAAATCAAATCGGAttt                         <  2:871857‑M1/127‑1 (MQ=255)
                                                                                                                              cagggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGt                                                                                                                             <  3:1511396‑M1/27‑1 (MQ=255)
                                                                                                                               agggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCtttt                                                                       >  1:1849738‑M1/22‑102 (MQ=255)
                                                                                                                               agggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAAAATCAAATCGGATTTCa                       >  1:879824‑M1/22‑150 (MQ=255)
                                                                                                                                 ggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAg                                                >  2:1642765‑M1/20‑123 (MQ=255)
                                                                                                                                 ggacttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAAAATCAAATCGGATTTCACt                     <  1:660575‑M1/131‑1 (MQ=255)
                                                                                                                                  tGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccattta                    <  4:843989‑M2/150‑129 (MQ=255)
                                                                                                                                  tGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccattta                    <  1:991522‑M2/150‑129 (MQ=255)
                                                                                                                                  tGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat                                                                                                     <  2:728858‑M2/69‑48 (MQ=255)
                                                                                                                                  tGGTACCGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat                                                                                                     >  1:728858‑M2/1‑22 (MQ=255)
                                                                                                                                   acttgttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAAAATCAAATCGGATTTCACtat                   >  4:561634‑M1/18‑150 (MQ=255)
                                                                                                                                       gttcgcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAAAATCAAATCGGATTTCACTATATaa               >  4:1481431‑M1/14‑150 (MQ=255)
                                                                                                                                       ccGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgcc                         <  2:670532‑M2/140‑124 (MQ=255)
                                                                                                                                        cGAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgt              <  3:126114‑M2/150‑135 (MQ=255)
                                                                                                                                         gAGCGGCACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgtt             <  2:344249‑M2/150‑136 (MQ=255)
                                                                                                                                           gcaccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCtttttt                                                                     >  3:1186654‑M1/10‑92 (MQ=255)
                                                                                                                                            caccttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAAAATCAAATCGGATTTCACTATATAATCTCa          >  4:703264‑M1/9‑150 (MQ=255)
                                                                                                                                               cACTACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa                                                             <  3:1002152‑M2/96‑88 (MQ=255)
                                                                                                                                                ttccCTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATg                                                                                >  1:1962846‑M1/5‑76 (MQ=255)
                                                                                                                                                    ctaACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTtttatt                                                                 >  1:1056352/1‑87 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
AAAGGCGTTGTGCCGCAGCTTGTTAAAGAGATCACTTCTACTGATGATTTCTACCGTCTGGGTAAAGAACTGGCTCTGCAGAGCGGTCTGGCACACAAAGGTGACGTTGTAGTTATGGTTTCTGGTGCACTGGTACCGAGCGGCACTACTAACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAAAATCAAATCGGATTTCACTATATAATCTCACTTTATCT  >  NC_000913_3_pae_tpiA/1756934‑1757231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.