mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 349,692 | 0 | A | G | 34.6% | 7.2 / 16.1 | 26 | intergenic (+120/‑320) | prpB/prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 29.0% | 149.8 / 83.7 | 107 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 487 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 2727891 = | NA (NA) | 22 (0.280) | 18/248 | 6.1 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_pae_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 57 (0.690) | 16 (0.220) | 15/228 | 6.4 | 23.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 56 (0.770) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | = 225281 | NA (NA) | 20 (0.250) | 15/250 | 7.1 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 845565 = | 93 (1.120) | 13 (0.170) | 13/240 | 7.5 | 13.2% | intergenic (‑85/+176) | ybiO/glnQ | mechanosensitive channel protein, intermediate conductance/glutamine transporter subunit |
| ? | NC_000913_3_pae_tpiA | 845589 = | NA (NA) | intergenic (‑109/+152) | ybiO/glnQ | mechanosensitive channel protein, intermediate conductance/glutamine transporter subunit | |||||
| * | ? | NC_000913_3_pae_tpiA | 774624 = | 73 (0.880) | 15 (0.190) | 13/242 | 7.6 | 17.5% | intergenic (+22/‑128) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase |
| ? | NC_000913_3_pae_tpiA | 774648 = | 73 (0.950) | intergenic (+46/‑104) | ybgE/ybgC | putative inner membrane protein in cydABX‑ybgE operon/acyl‑CoA thioester hydrolase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3944978 | NA (NA) | 17 (0.210) | 13/248 | 7.8 | 35.1% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_tpiA | = 4038811 | 33 (0.400) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3437907 | 75 (0.900) | 12 (0.160) | 12/236 | 7.8 | 15.2% | intergenic (+13/‑117) | trkA/mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance |
| ? | NC_000913_3_pae_tpiA | = 3437911 | 66 (0.880) | intergenic (+17/‑113) | trkA/mscL | NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance | |||||
| * | ? | NC_000913_3_pae_tpiA | = 227052 | 40 (0.480) | 17 (0.210) | 13/248 | 7.8 | 30.8% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_pae_tpiA | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 4325867 = | 99 (1.190) | 15 (0.190) | 12/246 | 8.1 | 14.0% | noncoding (150/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_pae_tpiA | 4325897 = | 90 (1.150) | noncoding (180/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3946053 | 4 (0.050) | 13 (0.160) | 12/252 | 8.3 | 77.0% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_tpiA | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||