New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	404104 =	58 (0.730)	3 (0.040)	3/270	NT	5.1%	coding (402/1116 nt)	yaiC	diguanylate cyclase, cellulose regualtor
	?	NC_000913_3_pae_tpiA	404127 =	54 (0.690)					coding (425/1116 nt)	yaiC	diguanylate cyclase, cellulose regualtor

GATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCATTTATCCTCTGCTGTTTGGCTGGG  >  NC_000913_3_pae_tpiA/403979‑404273                                                                                                                                                     |                                                                                                                                                    gATCCGATTAGCCGGGAAATTTACAACTTAAAAACCGAAGAAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAACCGTGCTGCCTTCCACCACGATGTTGAGGATTATGTGTCTGAATTTGATGGGGGCAGGAGGCGCCCGTCt                                                                                                                                                     >  2:1019940/1‑149 (MQ=255)  aTCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTg                                                                                                                                                    >  2:517216/1‑149 (MQ=255)   tCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGt                                                                                                                                                   <  2:437451/149‑1 (MQ=255)   tCCGCTTAGCCGGGAAATATACAACTGAAAAACGGAAGTAGAAGTGGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGGGGCCCCGGTCTGt                                                                                                                                                   >  2:606727/1‑149 (MQ=255)     acaataagtggaagggaggtccaccattccagcggcgcactattgaacgacacggtaatgcccgtcagctcgagggtgacaaggcaggaaaccaccatcaacaccagacccgcgacaaacaGACGGGGGCAGGCGGCCCCCGTCTGttt                                                                                                                                                 >  2:1194603‑M1/122‑149 (MQ=255)       cTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGt                                                                                                                                               >  1:1273988/1‑149 (MQ=255)        ttAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTCAGCTTATGGGTCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTGTGTc                                                                                                                                              >  1:1266023/1‑149 (MQ=255)            gcGGGAAATTTACAACCTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGTCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCgg                                                                                                                                          <  2:97722/148‑1 (MQ=255)                  aaTTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGGCTTTCACCGCGGTGTTGGTGATCAGGTGTGTGAATTTGATGGGGGGGGGCGGCCCCCGGCGGTTGGTCGCGGGCCTgg                                                                                                                                    >  1:436605/1‑149 (MQ=255)                   aTTTACAACTTAAAAACCGATGCAGTATGAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGgt                                                                                                                                   <  1:1089230/149‑1 (MQ=255)                    tttACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGgtg                                                                                                                                  >  2:1066746/1‑149 (MQ=255)                     ttACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGgtgt                                                                                                                                 >  1:157845/1‑149 (MQ=255)                        cAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGa                                                                                                                              <  2:289526/149‑1 (MQ=255)                          aCTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGAtg                                                                                                                            <  1:475996/149‑1 (MQ=255)                            ttAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGAttgt                                                                                                                          >  2:1245611/1‑149 (MQ=255)                            ttAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGAtggt                                                                                                                          >  2:886886/1‑149 (MQ=255)                             tcaaaaCCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGAtggtg                                                                                                                         <  1:872614/147‑1 (MQ=255)                             tAAAAACCGGTGCAGGATGAGCGGGAATGCGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGAtggtg                                                                                                                         <  1:30537/149‑1 (MQ=255)                                   ccGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTcc                                                                                                                   <  2:20080/149‑1 (MQ=255)                                      tggCAGTATTGGCGGGTAGGTGTGTAGGTGTGATGCGCGTATCTGTGCTGCCGTCCTGCGCGATGTTTGTGATTATGTGTCTGAGTTTGATGGTGGCAGGCGGCCCCCCTCTGTTTGGCGCGGGTCTGGTGTTGATGGTTGTTTCCTGc                                                                                                                <  2:1239819/147‑1 (MQ=255)                                        gCAGTATTAGCGGGAATGTGGGGAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCt                                                                                                              <  1:419559/149‑1 (MQ=255)                                         cAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCtt                                                                                                             <  1:845688/149‑1 (MQ=255)                                           gatttAGTGGTAATGGGGGTAGCCGTATGCGGCGTCAGCTTGTTGTCTTCTACCGCGATGTTGATGATTCTGTGTCTGAATTTTATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGt                                                                                                           <  2:797503/146‑1 (MQ=255)                                            tATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTc                                                                                                          >  1:454570/1‑149 (MQ=255)                                                     gAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAg                                                                                                 <  1:1216668/149‑1 (MQ=255)                                                      aaTGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGc                                                                                                <  1:753891/149‑1 (MQ=255)                                                        tgtgGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGCTGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGGGGACCCCGTCTGTTTGTCGCGGGTCTGATGTTGAGGGTGGTTTGCTGCCTTGTCCCCCTCGAGccg                                                                                              >  2:692533/1‑147 (MQ=255)                                                          tgGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGAc                                                                                            >  1:236197/1‑149 (MQ=255)                                                          tgGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGAc                                                                                            >  1:1249626/1‑149 (MQ=255)                                                            tgTAGTCGCAATGGGGGTGAGTGTCCTGCTTTCCAGCGGGATGTTGATGATTATGGGTCTGAAGTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACgg                                                                                          <  2:1136412/148‑1 (MQ=255)                                                              tAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGc                                                                                        >  1:342096/1‑149 (MQ=255)                                                                     aaTGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACCGGCCTTACCg                                                                                 >  2:784262/1‑149 (MQ=255)                                                                      aTGTGCGTAAACGCGCCGCCTTCCACCGCGATGTGGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTTGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCgt                                                                                <  2:290870/149‑1 (MQ=255)                                                                             tAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑Tc                                                                        >  2:896542/1‑149 (MQ=255)                                                                               aaCGTGCTGCCGTCCACGGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCaa                                                                      <  2:1309933/149‑1 (MQ=255)                                                                                 ggTGCTGCTTTGCGCCTCGATGTGGATTAGTATGTGTCGGAATTTGTTGGGGGCAGGCGTCCCCCTTCTGTTGGTCGCGTTTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCCCCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATa                                                                    <  2:270942/148‑1 (MQ=255)                                                                                  gTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAg                                                                   <  1:1420646/149‑1 (MQ=255)                                                                                  gTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGACGT‑TCAATAg                                                                   >  1:444779/1‑149 (MQ=255)                                                                                          ttCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCGTTACCGTGTCGG‑TCAATAGTGcgccgc                                                           >  2:557973/1‑149 (MQ=255)                                                                                            gaaaccaccatcaacaccagacccgcgacaaacaGATGGGGGCAGGCGGCCCCCGTCTg                                                                                                                                                    <  1:1156016‑M1/25‑1 (MQ=255)                                                                                            gaaaccaccatcaacaccagacccgcgacaaacaGATGGGGGCAGGCGGCCCCCGTCTg                                                                                                                                                    >  2:1156016‑M1/35‑59 (MQ=255)                                                                                                   gATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCTTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAAtggt                                                  >  1:225684/1‑149 (MQ=255)                                                                                                    aTGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAAtggtg                                                 <  2:588823/149‑1 (MQ=255)                                                                                                    aTGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAAtggtg                                                 <  1:1272513/149‑1 (MQ=255)                                                                                                    aTGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCA‑TAGAGAGACCTGCCAATAGTGCGCCGCTGGAAtggtg                                                 <  2:1011163/149‑1 (MQ=255)                                                                                                      gTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGc                                               >  1:531444/1‑149 (MQ=255)                                                                                                       ttGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGct                                              >  2:1230390/1‑149 (MQ=255)                                                                                                       ttGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGct                                              >  2:1230307/1‑149 (MQ=255)                                                                                                           tgatTATGTGTCTGAATTTGATGGGGGCAAGCGGCCCACGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATANTGCGCCGCTGGAATGGTGGCTCTcc                                          >  1:936058/1‑149 (MQ=255)                                                                                                                  gtgtCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCa                                   <  1:517216/149‑1 (MQ=255)                                                                                                                     tCTGAATTTGATGGGGGCAGGCGGCCCCCGGCTGGTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCatta                                <  2:905203/149‑1 (MQ=255)                                                                                                                     tCTGAATTTGATGGGGGCAGGCGGCCACCGTCTGTTTGTCGCGGGGCTGGTGTTGAGGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCatta                                <  2:1362168/149‑1 (MQ=255)                                                                                                                       tGAATTTGATGGAGGCAGGCGGCCCTCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCattatt                              <  1:1245611/149‑1 (MQ=255)                                                                                                                       tGAATTGGATGGGGGCAGGCGGCCGCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCattatt                              <  2:52226/149‑1 (MQ=255)                                                                                                                         aaacagacgggggccgcctgcccccgtcTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGACCTCCCTTCCACTTATTGt                            >  2:1194603‑M2/29‑149 (MQ=255)                                                                                                                           tttGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCCCCCTTCCCATTATTGTCa                          >  2:75494/1‑149 (MQ=255)                                                                                                                            ttGATGGGGGCAGGCGGCCTGCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCAt                         <  2:936125/149‑1 (MQ=255)                                                                                                                            cagacgggggccgcctgcccccatcTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTc                                                                                                                    <  1:1156016‑M2/34‑1 (MQ=255)                                                                                                                            cagacgggggccgcctgcccccatcTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTc                                                                                                                    >  2:1156016‑M2/26‑59 (MQ=255)                                                                                                                             tGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCAtt                        >  1:534676/1‑149 (MQ=255)                                                                                                                                  ggggCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGCGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTACCTTCCCATTATTGTCATTTATcc                   >  2:1094547/1‑149 (MQ=255)                                                                                                                                   gggCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCATTTATCct                  <  1:1284271/149‑1 (MQ=255)                                                                                                                                            gcCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCATTTATCCTCTGCTGttt         <  2:236197/149‑1 (MQ=255)                                                                                                                                            gcCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGG‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCATTTATCCTCTGCTGttt         <  2:157845/149‑1 (MQ=255)                                                                                                                                              ccccGTCTGTTTGTCGCGGGTCAGCTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCATTTATCCTCTGCTGTTTgg       >  1:738961/1‑149 (MQ=255)                                                                                                                                                  gTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCGCCCTTCCCATTATTGTCATTTATCCTCTTCTGTTTGGCttg   >  1:315506/1‑147 (MQ=255)                                                                                                                                                   tttgtctgtcGTGGGTCTGGTGTTGCTGGTGGTTTCCTGCCCTGTGCCCCTCGAGCTGACGCACCTTTAATTTTTGT‑TCAATCGCGCGCCTCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCATTTATCCTCTGCTGTTTGGCTggg  <  1:1401734/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GATCCGCTTAGCCGGGAAATTTACAACTTAAAAACCGATGCAGTATTAGCGGGAATGTGGGTAGGCGTAATGGGCGTAAACGTGCTGCCTTCCACCGCGATGTTGATGATTATGTGTCTGAATTTGATGGGGGCAGGCGGCCCCCGTCTGTTTGTCGCGGGTCTGGTGTTGATGGTGGTTTCCTGCCTTGTCACCCTCGAGCTGACGGGCATTACCGTGTCGT‑TCAATAGTGCGCCGCTGGAATGGTGGCTCTCCCTTCCCATTATTGTCATTTATCCTCTGCTGTTTGGCTGGG  >  NC_000913_3_pae_tpiA/403979‑404273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.