New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1207790 =	59 (0.740)	15 (0.210)	14/242	NT	24.0%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_pae_tpiA	1209619 =	43 (0.610)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

CGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA  >  NC_000913_3_pae_tpiA/1209479‑1209767                                                                                                                                             |                                                                                                                                                     cGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCAAGTATGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGa                                                                                                                                              <  1:699897/149‑1 (MQ=255)    attaGCCCTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAGTGCATTTCAGCCATCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa                                                                                                                                           <  2:194104/146‑1 (MQ=255)               ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGTCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAAGGCAGAGCCTTCACCCAAACCAACGTTTATGAAAATGAataaataa                                                                                                                                >  2:648919/1‑149 (MQ=255)               ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATaa                                                                                                                                <  1:12697/149‑1 (MQ=255)                 aGTTACGGGTAGTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACa                                                                                                                              <  2:1353144/149‑1 (MQ=255)                  gTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGTGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                                             <  2:843529/149‑1 (MQ=255)                      cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAAAAATAACAAGGaa                                                                                                                         >  2:267280/1‑149 (MQ=255)                        ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                                             >  2:477046/1‑143 (MQ=255)                        ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                                             <  1:477046/143‑1 (MQ=255)                            ttcttcATCATAAACAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTTGCTGAAGTCCACGGAACCCGTACACCAACCGGTAATGCAAAGCTTTTTCCCACTCCAATGTTTATGAAAATGAATAAATAACAAGCAAATGGca                                                                                                                   <  2:242436/149‑1 (MQ=255)                                  gattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc                                                                                                             <  2:266687‑M2/42‑1 (MQ=255)                                  agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc                                                                                                             <  1:202727/149‑1 (MQ=255)                                   gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTTGCGGAGCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCCACGCTTATGAAAATGACACACTAACAAGCAGAATGcatcatcac                                                                                                            >  2:529546/1‑146 (MQ=255)                                      gAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc                                                                                                         <  1:602160/149‑1 (MQ=255)                                       ctgattgctcaatcccaccaatcatcaccagtatagctatgaatccgggtcgtcctaatgtagccgtggctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt                                                                                                        <  1:478362‑M2/47‑1 (MQ=255)                                       aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAAGTTTATGAAAATGACGAAATAACAAGCAAATGGCATCATTCCTGCt                                                                                                        >  2:1108921/1‑149 (MQ=255)                                               gCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAg                                                                                                >  2:92089/1‑149 (MQ=255)                                                 aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                                              >  2:1342854/1‑149 (MQ=255)                                                  ataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg                                                                                             >  2:1167815‑M2/92‑149 (MQ=255)                                                     ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACATGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt                                                                                          <  1:1382187/149‑1 (MQ=255)                                                       accaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt                                                                                        <  1:867690‑M2/63‑1 (MQ=255)                                                         caatcataaccgttatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATACCTGCTTTTACCCGGGGGATTGaa                                                                                      <  2:1306658‑M2/65‑1 (MQ=255)                                                          aatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                                                                     >  1:1290479‑M2/84‑149 (MQ=255)                                                           ttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                                    <  1:473714/149‑1 (MQ=255)                                                           ttCAGCCAGCCTGTTGGCGGAGTGGCGGAAGGCCACGGAACCGCGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATAAAGAAATAACAAGCAAATGGCAGCATTCCTGCTTTTACCACGGGGATTTAACa                                                                                    <  2:502238/149‑1 (MQ=255)                                                           atcatagccggtatagctatgaaaccggtgcgtcctaacgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGTAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCACGGGGATGTAACa                                                                                    >  2:1019561‑M2/83‑149 (MQ=255)                                                             cataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATg                                                                                  <  2:216203‑M2/69‑1 (MQ=255)                                                              agccagccTATTGGCGGAGTAGCTGAAGGACACAGAACAGGGACACCAACAGATAATGAAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACTAGACAATGTGACCATTACGGTTTTTACCAGGGGAATTACACAtac                                                                                 >  2:1086308/1‑147 (MQ=255)                                                                 cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa                                                                              <  1:1092737/149‑1 (MQ=255)                                                                  agccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAt                                                                             <  1:844855/149‑1 (MQ=255)                                                                     cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                                          >  1:85533/1‑149 (MQ=255)                                                                      tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATACATCTTGGc                                                                         >  1:257323/1‑149 (MQ=255)                                                                        ttGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCACCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTa                                                                       <  1:121703/149‑1 (MQ=255)                                                                        tagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTa                                                                       <  1:87321‑M2/80‑1 (MQ=255)                                                                            tatgaacccggtgcgtcctaatgtagccgttgctgcattgagttttgctcctgctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa                                                                   <  1:297361‑M2/84‑1 (MQ=255)                                                                              gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTCATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACTAGGGGGATGTAACTTGCTTATTGGCTATGttgg                                                                 >  1:1231803/1‑146 (MQ=255)                                                                                 tGGCTGAGGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt                                                              >  2:1014883/1‑149 (MQ=255)                                                                                      gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATaaa                                                         >  2:1397333/1‑149 (MQ=255)                                                                                          gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                                     <  2:501594/149‑1 (MQ=255)                                                                                          gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                                     <  2:501753/149‑1 (MQ=255)                                                                                             ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa                                                  >  1:1152333‑M2/49‑149 (MQ=255)                                                                                             ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa                                                  >  1:355824‑M2/49‑149 (MQ=255)                                                                                              cGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                                                 <  2:903441/149‑1 (MQ=255)                                                                                                gAACCGGGAACGCAACAAGTAATGCAGAGCCCTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa                                               <  2:551840/149‑1 (MQ=255)                                                                                                   tagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa                                            <  1:1234901‑M2/107‑1 (MQ=255)                                                                                                        acacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGACATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAAGACAg                                       >  1:399202/1‑149 (MQ=255)                                                                                                        acacCAAAAGGTAATGCAGAGCCTTCTCCCAACCGAACGTTTAGGAAAATGAAGAAATAACAAGCATATGGCATCATTCCTGCTTTTACCATGGGTATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAg                                       <  2:388702/149‑1 (MQ=255)                                                                                                         cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTTGCTAGGTACGCGTATCAACAAATGACCAGAACACAGa                                      <  2:670115/149‑1 (MQ=255)                                                                                                         cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGa                                      <  2:69163/149‑1 (MQ=255)                                                                                                          acCAACAGGTAATGCAGAGCCTTCTCCCCACCGGGCGTGGATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt                                     >  1:707015/1‑149 (MQ=255)                                                                                                          acCAACAGGTAACGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt                                     <  1:896998/149‑1 (MQ=255)                                                                                                             aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTa                                  >  1:1343379/1‑149 (MQ=255)                                                                                                              aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATCTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAc                                 <  1:639640/149‑1 (MQ=255)                                                                                                                 ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAc                              >  2:972275‑M2/29‑149 (MQ=255)                                                                                                                  tgattttcgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACg                             <  2:1126235‑M2/122‑1 (MQ=255)                                                                                                                  gTAATGCAGAGCCTTCTCCCAAACCAACTTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAGTGACCAGAACACAGATCTACAACg                             <  1:789426/149‑1 (MQ=255)                                                                                                                   tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAAAAcat                            >  2:696289/1‑147 (MQ=255)                                                                                                                     aTGCAGAGCCTTCTTCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaa                          <  2:159966/149‑1 (MQ=255)                                                                                                                           tacctgttcccaaaccaaCGTTTATGAAAATTAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACTTGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt                    <  2:506474‑M2/131‑1 (MQ=255)                                                                                                                           ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACGCCGTATTGCGCt                    >  1:605030‑M2/19‑149 (MQ=255)                                                                                                                           agCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAGATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt                    <  1:965148/149‑1 (MQ=255)                                                                                                                              cttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa                 <  1:520891‑M2/134‑1 (MQ=255)                                                                                                                               ttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGAGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAAc                >  2:1146203‑M2/15‑149 (MQ=255)                                                                                                                                tctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAAATGCTTATTGGCTATGTACGCGTATCAACAAATGAACAGAACACCGCTCTCCAACGTAATGCGCTGAACt               >  1:226416‑M2/14‑149 (MQ=255)                                                                                                                                tatcccaatccaaCGTTTATGAAAATGAAGAAACAACTAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACt               <  1:262407‑M2/136‑1 (MQ=255)                                                                                                                                  tcccaaacccaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgt             >  2:492867‑M2/12‑149 (MQ=255)                                                                                                                                   cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGCATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACtgtg            >  1:41671‑M2/11‑149 (MQ=255)                                                                                                                                    ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc           >  1:425868‑M2/10‑149 (MQ=255)                                                                                                                                    ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGc           >  1:1035070‑M2/10‑149 (MQ=255)                                                                                                                                    ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTgaactaggc           >  2:291141‑M2/10‑145 (MQ=255)                                                                                                                                    ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCATGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAAAACACAGATCTACAACGTAATGCGCTGAActgtga           >  2:241459‑M2/10‑148 (MQ=255)                                                                                                                                     caagccaaCGTTTATGGAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGTCTATGTACGCGTATCAACAAATGGCCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa          <  2:409257‑M2/141‑1 (MQ=255)                                                                                                                                     caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACACGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa          >  1:692196‑M2/9‑149 (MQ=255)                                                                                                                                      aaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATCCGCTGAACTGTGCAg         >  1:753147‑M2/8‑149 (MQ=255)                                                                                                                                        accaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGa       <  2:707015‑M2/144‑1 (MQ=255)                                                                                                                                         ccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGAt      <  2:781305‑M2/145‑1 (MQ=255)                                                                                                                                           aaCGTTTATGAAAATGAAGAAATAACAAGCTAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGAACACTTATCAACAAATGAACAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGc    <  1:567559‑M2/147‑1 (MQ=255)                                                                                                                                             cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGa  <  2:789129/149‑1 (MQ=255)                                                                                                                                             cGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGa  <  2:85533/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                     CGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGA  >  NC_000913_3_pae_tpiA/1209479‑1209767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.