New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 120780558 (0.730)16 (0.230) 13/242 NT 25.4% coding (305/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913_3_pae_tpiA = 1209602 43 (0.610)pseudogene (18/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTG  >  NC_000913_3_pae_tpiA/1209458‑1209750
                                                                                                                                                |                                                                                                                                                    
tAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctt                                                                                                                                                  >  2:1245963‑M2/1‑145 (MQ=255)
   ctcAGGCAACTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctc                                                                                                                                               >  1:1175940‑M2/2‑142 (MQ=255)
        gctatttatttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCaaa                                                                                                                                          <  1:438816/146‑1 (MQ=255)
                   gTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc                                                                                                                               >  2:697992‑M2/1‑126 (MQ=255)
                   gTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc                                                                                                                               >  2:698457‑M2/1‑126 (MQ=255)
                     cGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCAAGTATGGTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGa                                                                                                                             <  1:699897/149‑1 (MQ=255)
                        attaGCCCTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCAGTGCATTTCAGCCATCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGaaaa                                                                                                                          <  2:194104/146‑1 (MQ=255)
                               tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttg                                                                                                                   <  1:1304987‑M2/149‑36 (MQ=255)
                               tttGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttg                                                                                                                   <  2:223594‑M2/149‑36 (MQ=255)
                                   ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGTCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAAGGCAGAGCCTTCACCCAAACCAACGTTTATGAAAATGAataaataa                                                                                                               >  2:648919/1‑149 (MQ=255)
                                   ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATaa                                                                                                               <  1:12697/149‑1 (MQ=255)
                                     aGTTACGGGTAGTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACa                                                                                                             <  2:1353144/149‑1 (MQ=255)
                                      gTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGTGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                            <  2:843529/149‑1 (MQ=255)
                                          cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAAAAATAACAAGGaa                                                                                                        >  2:267280/1‑149 (MQ=255)
                                            ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                            >  2:477046/1‑143 (MQ=255)
                                            ggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACaa                                                                                                            <  1:477046/143‑1 (MQ=255)
                                                ttcttcATCATAAACAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTTGCTGAAGTCCACGGAACCCGTACACCAACCGGTAATGCAAAGCTTTTTCCCACTCCAATGTTTATGAAAATGAATAAATAACAAGCAAATGGca                                                                                                  <  2:242436/149‑1 (MQ=255)
                                                    tcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgat                                                                                              <  1:1338640‑M2/149‑57 (MQ=255)
                                                      agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc                                                                                            <  1:202727/149‑1 (MQ=255)
                                                       gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTTGCGGAGCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCCACGCTTATGAAAATGACACACTAACAAGCAGAATGcatcatcac                                                                                           >  2:529546/1‑146 (MQ=255)
                                                          gAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc                                                                                        <  1:602160/149‑1 (MQ=255)
                                                           aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAAAGTTTATGAAAATGACGAAATAACAAGCAAATGGCATCATTCCTGCt                                                                                       >  2:1108921/1‑149 (MQ=255)
                                                                   gCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACAAg                                                                               >  2:92089/1‑149 (MQ=255)
                                                                     aCCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggg                                                                             >  2:1342854/1‑149 (MQ=255)
                                                                         ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACATGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt                                                                         <  1:1382187/149‑1 (MQ=255)
                                                                               ttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                                                   <  1:473714/149‑1 (MQ=255)
                                                                               ttCAGCCAGCCTGTTGGCGGAGTGGCGGAAGGCCACGGAACCGCGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATAAAGAAATAACAAGCAAATGGCAGCATTCCTGCTTTTACCACGGGGATTTAACa                                                                   <  2:502238/149‑1 (MQ=255)
                                                                                  agccagccTATTGGCGGAGTAGCTGAAGGACACAGAACAGGGACACCAACAGATAATGAAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACTAGACAATGTGACCATTACGGTTTTTACCAGGGGAATTACACAtac                                                                >  2:1086308/1‑147 (MQ=255)
                                                                                     cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa                                                             <  1:1092737/149‑1 (MQ=255)
                                                                                      agccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAt                                                            <  1:844855/149‑1 (MQ=255)
                                                                                         cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg                                                         >  1:85533/1‑149 (MQ=255)
                                                                                          tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgc                                                        <  1:1316570‑M2/149‑95 (MQ=255)
                                                                                          tGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATACATCTTGGc                                                        >  1:257323/1‑149 (MQ=255)
                                                                                            ttGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCACCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTa                                                      <  1:121703/149‑1 (MQ=255)
                                                                                             tGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaa                                                     >  2:1178424‑M2/1‑52 (MQ=255)
                                                                                                  gAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTCATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACTAGGGGGATGTAACTTGCTTATTGGCTATGttgg                                                >  1:1231803/1‑146 (MQ=255)
                                                                                                   aGTGCCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcgg                                               >  1:544250‑M2/1‑46 (MQ=255)
                                                                                                     tGGCTGAGGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGt                                             >  2:1014883/1‑149 (MQ=255)
                                                                                                      ggTTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaa                                            >  2:121763‑M2/1‑43 (MQ=255)
                                                                                                          gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATaaa                                        >  2:1397333/1‑149 (MQ=255)
                                                                                                            aGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaact                                      >  1:223594‑M2/1‑37 (MQ=255)
                                                                                                              gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                    <  2:501594/149‑1 (MQ=255)
                                                                                                              gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                                    <  2:501753/149‑1 (MQ=255)
                                                                                                                cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggattaacagcagcgcgcgaagtgcggtaagtaactggtc                                  <  2:1399847‑M2/149‑117 (MQ=255)
                                                                                                                 aCGGCACCGGGACACCAACACGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaccctccgacggggaagtgcggaaagtaactgggcg                                 <  2:997304‑M2/149‑118 (MQ=255)
                                                                                                                  cGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                                <  2:903441/149‑1 (MQ=255)
                                                                                                                    gACCCGTGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgc                              >  2:1276933‑M2/1‑29 (MQ=255)
                                                                                                                    gAACCGGGAACGCAACAAGTAATGCAGAGCCCTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa                              <  2:551840/149‑1 (MQ=255)
                                                                                                                          ggACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgcccc                        >  1:1304755‑M2/1‑23 (MQ=255)
                                                                                                                            acacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGACATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAAGACAg                      >  1:399202/1‑149 (MQ=255)
                                                                                                                            acacCAAAAGGTAATGCAGAGCCTTCTCCCAACCGAACGTTTAGGAAAATGAAGAAATAACAAGCATATGGCATCATTCCTGCTTTTACCATGGGTATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAg                      <  2:388702/149‑1 (MQ=255)
                                                                                                                             cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTTGCTAGGTACGCGTATCAACAAATGACCAGAACACAGa                     <  2:670115/149‑1 (MQ=255)
                                                                                                                             cacCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGa                     <  2:69163/149‑1 (MQ=255)
                                                                                                                              acCAACAGGTAATGCAGAGCCTTCTCCCCACCGGGCGTGGATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt                    >  1:707015/1‑149 (MQ=255)
                                                                                                                              acCAACAGGTAACGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt                    <  1:896998/149‑1 (MQ=255)
                                                                                                                                 aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTa                 >  1:1343379/1‑149 (MQ=255)
                                                                                                                                  aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATCTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAc                <  1:639640/149‑1 (MQ=255)
                                                                                                                                      gTAATGCAGAGCCTTCTCCCAAACCAACTTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAGTGACCAGAACACAGATCTACAACg            <  1:789426/149‑1 (MQ=255)
                                                                                                                                       tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAAAAcat           >  2:696289/1‑147 (MQ=255)
                                                                                                                                         aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggca         <  2:155023‑M2/149‑142 (MQ=255)
                                                                                                                                         aTGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgccgccccttctccaggctggca         <  2:154962‑M2/149‑142 (MQ=255)
                                                                                                                                         aTGCAGAGCCTTCTTCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaa         <  2:159966/149‑1 (MQ=255)
                                                                                                                                               agCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAGATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt   <  1:965148/149‑1 (MQ=255)
                                                                                                                                                gccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtcgtgcggccccttctacaggctggcaccggatg  <  1:136174‑M2/149‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
TAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTG  >  NC_000913_3_pae_tpiA/1209458‑1209750

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.