| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 2282829 | 127 (1.030) | 15 (0.130) | 15/236 | 11.9 | 11.4% | intergenic (+28/+111) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein |
| ? | NC_000913_3_pae_tpiA | = 2282833 | 118 (1.050) | intergenic (+32/+107) | rplY/yejK | 50S ribosomal subunit protein L25/spermidine nucleoid‑associated protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCTAAAGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/2282669‑2282829‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaaccccgcCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTGAGCTTTAACTTTGATTTCTTTACCGTCAACAACGATGGTCAGAACTTCGCTG < NC_000913_3_pae_tpiA/2282833‑2282687 AGCTAAAGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTA > 3:488148/1‑150AGCTAAAGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTA > 3:488143/1‑150AGCTAAAGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTA > 3:488142/1‑150 GCTAAAGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAATTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGCTCGCGCTTAATTGCTGAATAAGTTGTAA > 1:843421/1‑150 AAAGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAA > 4:633189/1‑150 AAAGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAA > 2:197918/1‑150 AAGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAA < 3:196677/150‑1 AAGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAA > 2:1402816/1‑150 CTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCC < 1:230706/150‑1 cGAATTCTACAGCGAAGTCCTGACCATCGTTGTTGACGGTACAGAAATCAATGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGTAGCTGCAGAACATCGATTTCGTTCGCGCTTAATTGCTGAAAAAGTTGTAAAAAGCCCC < 4:52461/149‑1 TGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCC < 4:503271/150‑1 AGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCCGGAGCGGGGTTT < 2:1166629/150‑1 TCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCCGGAGCGGGGTTTTTT < 1:787409/150‑1 CTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAA > 3:634223/1‑124 CTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAA < 4:634223/124‑1 ACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCCGGAGCGGGGTTTTT > 3:740574/1‑145 ACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCCGGAGCGGGGTTTTT < 4:740574/145‑1 GTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCCGGAGCGGGGTTTT > 3:858821/1‑128 GTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCCGGAGCGGGGTTTT < 4:858821/128‑1 AAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAA > 1:715438/1‑150 AAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAG < 2:715438/150‑1 AAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGAT < 3:338131/150‑1 GACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGCAAAAAACCCCGCCGGAGCGGGGTTTTTTAC > 4:893921/1‑106 GACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGCAAAAAACCCCGCCGGAGCGGGGTTTTTTAC < 3:893921/106‑1 TACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGCCGGAGCGGGGTTTTTTACAAAGTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTC < 2:65424/150‑1 CCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAA > 2:933605/1‑67 CCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAA < 1:933605/67‑1 AATTGCTGAATAAGTTGTAAAAAACCCCGCCGGACAGGGGGTTTTTACACCTTATTAAGCAATTAAGCGCGAACGAAGTCGATATGATACAGCTTCGGTTTGTACGGGTGACGGTGTACGTCCTGAGCTTTAACTTAGATTTCTTTAGCG > 2:843421/1‑150 cgatctGTTGTAAAAAACCCCGCCGGAGCGGTGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTGAGCTTTAACTTTGATTTCTTTACCGTCAACAA < 1:1085395/144‑1 TTGTAAAAAACCCCGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTTAGCTTTAAACTTGATTTCTTTACCGTCAACAACagatcg > 2:1085395/1‑144 AAAAAACCCCGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTGAGCTTTAACTTTGATTTCTTTACCGTCAACAACGATGGTCAGA > 3:549253/1‑150 AAAAAACCCCGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTGAGCTTTAACTTTGATTTCTTTACCGTCAACAACGATGGTCAGA > 1:625463/1‑150 AAAAACCCCGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTGAGCTTTAACTTTGATTTCTTTACCGTCAACAACGATGGTCAGAA < 3:772262/150‑1 CCGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTGAGCTTTAACTTTGATTTCTTTACCGTCAACAACGATGGTCAGAACTTCGCT < 2:445014/150‑1 CGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTGAGCTTTAACTTTGATTTCTTTACCGTCAACAACGATGGTCAGAACTTCGCTG > 3:188865/1‑150 CGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTGAGCTTTAACTTTGATTTCTTTACCGTCAACAACGA > 1:23175/1‑133 CGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTGAGCTTTAACTTTGATTTCTTTACCGTCAACAACGA < 2:23175/133‑1 CGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTGAGCTTTAA > 4:369481/1‑106 CGCCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTGAGCTTTAA < 3:369481/106‑1 AGCTAAAGCTGAATTCTACAGCGAAGTTCTGACCATCGTTGTTGACGGTAAAGAAATCAAAGTTAAAGCTCAGGACGTACAGCGTCACCCGTACAAACCGAAGCTGCAGCACATCGACTTCGTTCGCGCTTAATTGCTGAATAAGTTGTAAAAAACCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/2282669‑2282829‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaaccccgcCGGAGCGGGGTTTTTTACAACTTATTCAGCAATTAAGCGCGAACGAAGTCGATGTGCTGCAGCTTCGGTTTGTACGGGTGACGCTGTACGTCCTGAGCTTTAACTTTGATTTCTTTACCGTCAACAACGATGGTCAGAACTTCGCTG < NC_000913_3_pae_tpiA/2282833‑2282687 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |