New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	225456 =	8 (0.080)	23 (0.250)	20/222	7.1	75.7%	noncoding (76/77 nt)	ileV	tRNA‑Ile
	?	NC_000913_3_pae_tpiA	= 3427056	NA (NA)					intergenic (‑23/+20)	alaU/ileU	tRNA‑Ala/tRNA‑Ile
Rejected: Coverage evenness skew score above cutoff.

AAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGC‑CGTGCAAATTT  >  NC_000913_3_pae_tpiA/3427000‑3427076                                                         |                      aaaGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCACG‑GCAAAttt  >  1:934399/1‑77 (MQ=1) aaaGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCACG‑GCAAAttt  <  2:934399/77‑1 (MQ=1)                                                         |                      AAAGCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGC‑CGTGCAAATTT  >  NC_000913_3_pae_tpiA/3427000‑3427076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.