New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2024598 =	54 (1.030)	8 (0.160)	8/260	5.2	14.1%	intergenic (+7/+37)	rcsA/dsrB	transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein
	?	NC_000913_3_pae_tpiA	2024624 =	48 (0.990)					intergenic (+33/+11)	rcsA/dsrB	transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGG  >  NC_000913_3_pae_tpiA/2024477‑2024772                                                                                                                                                    |                                                                                                                                                     aTCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGc                                                                                                                                                     >  2:913741/1‑149 (MQ=255)      aTAAAGGTAATATTAAACGTAAGATCGACGCTCAAAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACACTCTTACTGTTTGTTTCCCACCATGCAGGCTgtac                                                                                                                                                <  2:194714/149‑4 (MQ=255)        aaaGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATaa                                                                                                                                              <  1:113746/149‑1 (MQ=255)            gTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGAtt                                                                                                                                          >  2:370751/1‑149 (MQ=255)                       cGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtc                                                                                                                               <  1:370751/149‑1 (MQ=255)                         tAAGATCAAAATGCATAATAAACACGTTATCTACCATGTCGTCCGACTGACGGATAATGTGGCTGATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtctc                                                                                                                             <  2:744892/149‑1 (MQ=255)                             aTCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGAt                                                                                                                                           >  2:801010/1‑131 (MQ=255)                             aTCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGAt                                                                                                                                           <  1:801010/131‑1 (MQ=255)                             aTCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGAATAATGGTATTTTTGTCAACATGCGCTACGAAATTCTGACTGGTTGTTTCCCACCAGTCGGGCTGAATAAGATTACTCTTCTTtctcacca                                                                                                                         >  1:452418/1‑145 (MQ=255)                                        tagtaaACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTc                                                                                                              <  2:888447/146‑1 (MQ=255)                                                   ttATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTg                                                                                                   <  2:122437/149‑1 (MQ=255)                                                     aTCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCt                                                                                                 <  1:841677/149‑1 (MQ=255)                                                        tACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCa                                                                                              <  1:846422/149‑1 (MQ=255)                                                        tACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCa                                                                                              <  1:732486/149‑1 (MQ=255)                                                             tGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTaaa                                                                                         >  1:61604/1‑149 (MQ=255)                                                                        tGACGGATAATTTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGc                                                                              >  2:256706/1‑149 (MQ=255)                                                                        tGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTTCCTCATTAAAGAACCAGATGc                                                                              >  2:279653/1‑149 (MQ=255)                                                                         gACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGcc                                                                             <  1:712016/149‑1 (MQ=255)                                                                          aCGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGc                                                                                                  <  2:13490/127‑1 (MQ=255)                                                                          aCGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGc                                                                                                  >  1:13490/1‑127 (MQ=255)                                                                             gATAATGTGACTAATGGTATTTTTGTTAATATGTGCTAACACATTCTGACTAGTGGGTTACCACCAGTCAGGCTGAAGTAGATTACTCTGCTTTCTACACAAAGATACCGTCCTAATGCACTGCTTCATTATAGTACCAGATGCCGAGc                                                                         >  2:914400/1‑149 (MQ=255)                                                                                    tgACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTGTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGt                                                                  <  1:538458/149‑1 (MQ=255)                                                                                          aTGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGAt                                                                                <  2:582976/129‑1 (MQ=255)                                                                                          aTGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGAt                                                                                >  1:582976/1‑129 (MQ=255)                                                                                           tGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAg                                                           >  2:296070/1‑149 (MQ=255)                                                                                                     gTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAgg                                                 >  1:586352/1‑149 (MQ=255)                                                                                                      tCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGAt                                                                                <  1:345691/117‑1 (MQ=255)                                                                                                      tCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGAt                                                                                >  2:345691/1‑117 (MQ=255)                                                                                                       cAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTa                                               <  1:437122/149‑1 (MQ=255)                                                                                                        aaCATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCAtt                                                                                            >  1:887409/1‑103 (MQ=255)                                                                                                        aaCATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCAtt                                                                                            <  2:887409/103‑1 (MQ=255)                                                                                                         aCATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACa                                             >  2:503030/1‑149 (MQ=255)                                                                                                            tGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATtg                                          <  1:868686/149‑1 (MQ=255)                                                                                                               gcTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATaa                                                                                                                                              >  1:851309/1‑46 (MQ=255)                                                                                                               gcTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATaa                                                                                                                                              <  2:851309/46‑1 (MQ=255)                                                                                                               gcTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGc                                       <  1:256706/149‑1 (MQ=255)                                                                                                                 tAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAAACAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGGGCCt                                     >  2:811132/1‑149 (MQ=255)                                                                                                                    cacaTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTcc                                                                                                             <  1:799034/74‑1 (MQ=255)                                                                                                                    cacaTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTcc                                                                                                             >  2:799034/1‑74 (MQ=255)                                                                                                                    cacaTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGTCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCa                                  <  1:733239/149‑1 (MQ=255)                                                                                                                    cacaTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCa                                  <  2:594925/149‑1 (MQ=255)                                                                                                                     tcagccTGACTGGTGGGAAACCACCAGTCAGGCTGAATAAGATTACTATGCTTTCTCCAAAAAGATGACGTCCTGATGCCCTGCAGCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGCAACCAGGTACCTTGTGCCTTCAc                                 >  1:756443/6‑149 (MQ=255)                                                                                                                     acaTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACAt                                            >  2:623187/1‑138 (MQ=255)                                                                                                                     acaTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACAt                                            <  1:623187/138‑1 (MQ=255)                                                                                                                     acaTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGCCCt                                                                                                            >  1:205221/1‑74 (MQ=255)                                                                                                                     acaTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGCCCt                                                                                                            <  2:205221/74‑1 (MQ=255)                                                                                                                      caatccgACTGGTGGGTTCACACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACt                                <  1:771030/143‑1 (MQ=255)                                                                                                                         gcTGACTGGCGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTaaa                             <  2:510448/148‑1 (MQ=255)                                                                                                                                     tttCCCACCAGGCAGGCTGAATAAGATTACTCTGCTTTCTCCACAATGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAAGTACATTGTGCCTTCACTAAACTCCTCAACTGc                 <  1:502657/149‑1 (MQ=255)                                                                                                                                     gaaaccaccaGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGc                 <  2:83286/145‑1 (MQ=255)                                                                                                                                         gcaccaGTCAGGCTGAATAAGATTACTTTGCTTTCCGCACAAAGATACCGTCTTGATTCTCTGCTTGCTTAACGGACAGTATCACGTGCGGGTCAGCTTCCAGCGAAACCAGATAGACTGGGCCTTCACTAAACTCCTCAAGTGCCTGt             >  2:702538/2‑149 (MQ=255)                                                                                                                                         ccaccaGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTCCCAGt             >  2:609855/1‑149 (MQ=255)                                                                                                                                          cacccGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTa            <  1:233334/149‑1 (MQ=255)                                                                                                                                          caccaGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAAc                            >  2:711128/1‑133 (MQ=255)                                                                                                                                          caccaGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAAc                            <  1:711128/133‑1 (MQ=255)                                                                                                                                             caGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCa         >  1:699171/1‑149 (MQ=255)                                                                                                                                              aGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCag        >  1:523176/1‑148 (MQ=255)                                                                                                                                              aGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCAc        >  1:177489/1‑149 (MQ=255)                                                                                                                                                  aGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCa    <  2:586352/149‑1 (MQ=255)                                                                                                                                                    gCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCCGATGCCCCGCGGGTAGACTTCCACCGCAACCCGGTCCATTGTCCCCCCACTACACTCCTCACACGCCCGTACCACCCCacg  >  2:744493/1‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                                     ATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTACCACGCCAGG  >  NC_000913_3_pae_tpiA/2024477‑2024772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.