mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 3,423,531 | 0 | T | G | 43.6% | 22.1 / 56.5 | 39 | noncoding (12/120 nt) | rrfF | 5S ribosomal RNA of rrnD operon |
| * | NC_000913_3_pae_tpiA | 349,692 | 0 | A | G | 34.3% | 17.2 / 26.4 | 35 | intergenic (+120/‑320) | prpB/prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 26.0% | 536.2 / 213.8 | 308 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 212 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3423376 = | 190 (1.080) | 36 (0.210) | 29/258 | 11.8 | 16.1% | intergenic (+182/+47) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | 3423665 = | NA (NA) | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon | |||||
| * | ? | NC_000913_3_pae_tpiA | 671548 = | 151 (0.860) | 25 (0.160) | 24/240 | 12.6 | 15.6% | coding (58/1032 nt) | holA | DNA polymerase III, delta subunit |
| ? | NC_000913_3_pae_tpiA | 671580 = | 133 (0.830) | coding (26/1032 nt) | holA | DNA polymerase III, delta subunit | |||||
| * | ? | NC_000913_3_pae_tpiA | 3423665 = | NA (NA) | 35 (0.200) | 26/258 | 12.8 | 19.1% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | = 4171719 | 151 (0.860) | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4171719 | 151 (0.860) | 39 (0.230) | 25/258 | 13.2 | 17.5% | intergenic (+47/‑254) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913_3_pae_tpiA | = 4213078 | 219 (1.260) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_pae_tpiA | 4366755 = | 205 (1.170) | 24 (0.150) | 20/232 | 13.7 | 12.5% | intergenic (‑66/+52) | dcuA/aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| ? | NC_000913_3_pae_tpiA | 4366787 = | 155 (1.000) | intergenic (‑98/+20) | dcuA/aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase | |||||
| * | ? | NC_000913_3_pae_tpiA | = 382205 | NA (NA) | 37 (0.210) | 22/260 | 14.4 | NA | coding (532/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_pae_tpiA | = 382224 | NA (NA) | coding (551/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4040683 | 162 (0.920) | 36 (0.210) | 21/258 | 14.7 | 16.0% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | = 4213078 | 219 (1.260) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3946824 | 32 (0.180) | 26 (0.150) | 21/258 | 14.7 | 22.2% | intergenic (+5/‑48) | rrfC/aspT | 5S ribosomal RNA of rrnC operon/tRNA‑Asp |
| ? | NC_000913_3_pae_tpiA | = 4171717 | 151 (0.870) | intergenic (+45/‑256) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3570877 | 167 (0.950) | 23 (0.140) | 19/250 | 15.1 | 12.6% | coding (443/1974 nt) | glgX | glycogen debranching enzyme |
| ? | NC_000913_3_pae_tpiA | = 3570891 | 159 (0.950) | coding (429/1974 nt) | glgX | glycogen debranching enzyme | |||||
| * | ? | NC_000913_3_pae_tpiA | 3423665 = | NA (NA) | 30 (0.170) | 20/258 | 15.1 | 15.8% | intergenic (‑10/+3) | thrV/rrfD | tRNA‑Thr/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | = 4040683 | 162 (0.920) | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||