| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3383284 = | 75 (1.020) | 17 (0.260) | 13/226 | 5.4 | 21.1% | intergenic (+17/+46) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding |
| ? | NC_000913_3_pae_tpiA | 3383314 = | 59 (0.890) | intergenic (+47/+16) | degS/mdh | serine endoprotease, periplasmic/malate dehydrogenase, NAD(P)‑binding | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GAAGAGCGTAAATCTATCGGTACCCTGAGCGCATTTGAACAGAACGCGCTGGAAGGTATGCTGGATACGCTGAAGAAAGATATCGCCCTGGGCGAAGAGTTCGTTAATAAGTAATTGATTAGCGGATAATAAAAAACCGGAGCACAGACTCCGGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/3383443‑3383284‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccggttttttATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCACGCCGTTTTTA > NC_000913_3_pae_tpiA/3383314‑3383456 GAAGAGCGTAAATCTATCGGTACCCTGAGCGCATTTGAACAGAACGCGCTGGAAGGTATGCTGGATACGCTGAAGAAAGATATCGCCCTGGGCGAAGAGTTCGTTAATAAGTAATTGATTAGCGGATAATAAAAAACCGGAGCACAGACT > 1:600869/1‑150 CGTAAATCTATCGGTACCCTGAGCGCATTTGAACAGAACGCGCTGGAAGGTATGCTGGATACGCTGAAGAAAGATATCGCCCTGGGCGAAGAGTTCGTTAATAAGTAATTGATTAGCGGATAATAAAAAACCGGAGCACAGACTCCGGTT < 2:694215/150‑1 tatcaggGGTACCCTGAGCGCATTTGAACAGAACGCGCTGGAAGGTATGCTGGATACGCTGAAGAAAGATATCGCCCTGGGCGAAGAGTTCGTTAATAAGTAATTGATTAGCGGATAATAAAAAACCGGAGCACAGACTCCGGTTTTTTA < 3:12617/143‑1 GAAGGCGCTGGAAGGTATGATGGATACGCTGAAGAAAGATATCGCACTGGGCGAAGAGTTCGTTAATAAGTAATTGATTAGCGGATAATAAAAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAA < 2:482234/150‑1 GCTGAAGAAAGATATCGCCCTGGGCGAAGAGTTCGTTAATAAGTAATTGATTAGCGGATAATAAAAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATT > 4:338156/1‑110 GCTGAAGAAAGATATCGCCCTGGGCGAAGAGTTCGTTAATAAGTAATTGATTAGCGGATAATAAAAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATT < 3:338156/110‑1 GGGCGAAGAGTTCGTTAATAAGTAATTGATTAGCGGATAATAAAAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTC < 2:217531/150‑1 GTTAATAAGTAATTGATTAGCGGATAATAAAAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCG < 2:585848/96‑1 GTTAATAAGTAATTGATTAGCGGATAATAAAAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCG > 1:585848/1‑96 AAAAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCTTTCTGTTCAAATGCGCTCAGGGTACCGATAGATT > 2:138396/1‑150 AAAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAA < 4:209173/56‑1 AAAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAA < 4:209165/56‑1 AAAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAA > 3:209165/1‑56 AAAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAA > 3:209173/1‑56 AAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCTATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTC < 3:238304/84‑1 AAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAA < 1:679055/55‑1 AAAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAA > 2:679055/1‑55 AAAACCGGAGCACAGACCCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTC > 4:238304/1‑84 AAACCGGAGCACAGACTCCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTAC > 1:177183/1‑150 CCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCACGCCGTTT > 1:385938/1‑150 CCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCACGCCGTTT < 4:2267/150‑1 CCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTAT > 1:343020/1‑76 CCGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTAT < 2:343020/76‑1 CGGTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCTTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCACGCCGTTTT < 1:138396/150‑1 GTTTTTTATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCACGCCGTTTTTA < 2:437564/150‑1 GAAGAGCGTAAATCTATCGGTACCCTGAGCGCATTTGAACAGAACGCGCTGGAAGGTATGCTGGATACGCTGAAGAAAGATATCGCCCTGGGCGAAGAGTTCGTTAATAAGTAATTGATTAGCGGATAATAAAAAACCGGAGCACAGACTCCGGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/3383443‑3383284‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctccggttttttATTATCCGCTAATCAATTACTTATTAACGAACTCTTCGCCCAGGGCGATATCTTTCTTCAGCGTATCCAGCATACCTTCCAGCGCGTTCTGTTCAAATGCGCTCAGGGTACCGATAGATTTACGCTCTTCCACGCCGTTTTTA > NC_000913_3_pae_tpiA/3383314‑3383456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |