New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3782597	91 (1.240)	12 (0.180)	11/234	6.2	12.2%	intergenic (‑35/+45)	cysE/gpsA	serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase (NAD+)
	?	NC_000913_3_pae_tpiA	= 3782604	87 (1.270)					intergenic (‑42/+38)	cysE/gpsA	serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase (NAD+)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTAGCGTCGCGTGGTAAAAACTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCAT  >  NC_000913_3_pae_tpiA/3782457‑3782752                                                                                                                                                    |                                                                                                                                                     gTAGCGTCGCGTGGTAAAAACTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGcgcg                                                                                                                                                    >  1:576562/1‑150 (MQ=255)               tAAAAACTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGc                                                                                                                                      >  4:81860/1‑150 (MQ=255)               tAAAAACTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGc                                                                                                                                      >  3:234254/1‑150 (MQ=255)                aaaaaCTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCg                                                                                                                                     >  2:687626/1‑150 (MQ=255)                 aaaaCTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCga                                                                                                                                    >  1:815003/1‑149 (MQ=255)                  aaaCTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGt                                                                                                                                   >  2:182382/1‑150 (MQ=255)                       ggCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACaa                                                                                                                              <  2:35527/150‑1 (MQ=255)                       ggCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACaa                                                                                                                              <  3:81860/150‑1 (MQ=255)                         ccAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAg                                                                                                                            >  4:554669/1‑150 (MQ=255)                          cAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAgg                                                                                                                           <  2:889280/150‑1 (MQ=255)                           aGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGt                                                                                                                          >  4:518666/1‑150 (MQ=255)                              aTTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTcc                                                                                                                       <  4:234254/150‑1 (MQ=255)                                       caGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTa                                                                                                              <  2:576562/150‑1 (MQ=255)                                        aGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAg                                                                                                             >  2:341137/1‑150 (MQ=255)                                        aGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAg                                                                                                             <  2:329418/150‑1 (MQ=255)                                            cGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACTCGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGgc                                                                                                         >  2:297748/1‑150 (MQ=255)                                            cGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGt                                                                                                                                            >  3:134775/1‑115 (MQ=255)                                            cGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGt                                                                                                                                            <  4:134775/115‑1 (MQ=255)                                             gCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTa                                                                                                              <  1:883110/144‑1 (MQ=255)                                             gCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTa                                                                                                              >  2:883110/1‑144 (MQ=255)                                             gCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTACTGgct                                                                                                        >  1:686923/1‑150 (MQ=255)                                              ccAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGgctg                                                                                                       <  4:147966/150‑1 (MQ=255)                                              ccAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGgctg                                                                                                       >  4:464631/1‑150 (MQ=255)                                                aGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGgctgct                                                                                                     <  3:554669/150‑1 (MQ=255)                                                    ttCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTgcgc                                                                                                 <  3:518666/150‑1 (MQ=255)                                                       tGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTgcgc                                                                                                 <  2:125299/147‑1 (MQ=255)                                                       tGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTgcgc                                                                                                 >  1:125299/1‑147 (MQ=255)                                                        ggCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGgctgct                                                                                                     <  2:227674/142‑1 (MQ=255)                                                        ggCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGgctgct                                                                                                     >  1:227674/1‑142 (MQ=255)                                                         gCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTc                                                                                            >  3:10048/1‑150 (MQ=255)                                                         gCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTc                                                                                            >  2:100893/1‑150 (MQ=255)                                                            tCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTgg                                                                                                                   >  1:128378/1‑124 (MQ=255)                                                            tCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTgg                                                                                                                   <  2:128378/124‑1 (MQ=255)                                                              ggCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCgg                                                                                                                                                   <  1:481705/90‑1 (MQ=255)                                                              ggCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCgg                                                                                                                                                   >  2:481705/1‑90 (MQ=255)                                                              ggCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGc                                                                                       >  1:76340/1‑150 (MQ=255)                                                              ggCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGc                                                                                       <  1:687626/150‑1 (MQ=255)                                                              ggCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGATAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGc                                                                                       <  2:815003/150‑1 (MQ=255)                                                               gCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCg                                                                                      <  3:464631/150‑1 (MQ=255)                                                                 attAATATTGATCCAGACAAATTCCGCTTCTTTACACGACCTCGCTTACTCGACACGAAGAGATAGTTACCGGCCCGTTCTGCGCCGGCCGGGCGATGGCGGGAAAAAAAGTGCCCTGGGCTTAGTGGCTGCTGGGCGCGTCCtcggctg                                                                                    >  2:474022/2‑144 (MQ=255)                                                                   tAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTggg                                                                                                                  <  3:196836/118‑1 (MQ=255)                                                                   tAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTggg                                                                                                                  >  4:196836/1‑118 (MQ=255)                                                                   tAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCa                                                                                  <  2:705826/150‑1 (MQ=255)                                                                    aaTATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCAc                                                                                 <  1:341137/150‑1 (MQ=255)                                                                       atTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTgggg                                                                                                                 <  4:240927/115‑1 (MQ=255)                                                                       atTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTgggg                                                                                                                 >  3:240927/1‑115 (MQ=255)                                                                        ttGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGAcc                                                                             >  3:207538/1‑150 (MQ=255)                                                                             ccAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTa                                                                        <  1:795595/150‑1 (MQ=255)                                                                                       tCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGt                                                                                     >  4:125412/1‑127 (MQ=255)                                                                                       tCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGt                                                                                     <  3:125412/127‑1 (MQ=255)                                                                                        ccAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAAtgct                                                             <  2:76340/150‑1 (MQ=255)                                                                                         cAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCtt                                                                                         <  2:351799/121‑1 (MQ=255)                                                                                         cAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCtt                                                                                         >  1:351799/1‑121 (MQ=255)                                                                                         cAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAAtgctg                                                            >  2:512575/1‑150 (MQ=255)                                                                                            ttcttcACACGACATTGCTTACTCCACACGATGAGATACTGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGccc                                                         >  2:48289/1‑149 (MQ=255)                                                                                                 cacaCGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCg                                                                                                                                     >  4:482306/1‑69 (MQ=255)                                                                                                 cacaCGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCg                                                                                                                                     <  3:482306/69‑1 (MQ=255)                                                                                                 cacaCGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTa                                                                        >  4:462869/1‑130 (MQ=255)                                                                                                 cacaCGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTa                                                                        <  3:462869/130‑1 (MQ=255)                                                                                                 cacaCGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTcgcgc                                                    >  3:490830/1‑150 (MQ=255)                                                                                                   cacGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTcgcgcgc                                                  <  1:512575/150‑1 (MQ=255)                                                                                                    acGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTc                                                                                                                                           <  1:526523/60‑1 (MQ=255)                                                                                                    acGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTc                                                                                                                                           >  2:526523/1‑60 (MQ=255)                                                                                                     cGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGt                                                <  1:368770/150‑1 (MQ=255)                                                                                                         aTTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGttttt                                            >  1:414421/1‑150 (MQ=255)                                                                                                          ttGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTg                                                                                    >  4:540930/1‑109 (MQ=255)                                                                                                          ttGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTg                                                                                    <  3:540930/109‑1 (MQ=255)                                                                                                             cTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCg                                        <  2:414421/150‑1 (MQ=255)                                                                                                                aCTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCaa                                     >  2:419779/1‑150 (MQ=255)                                                                                                                  tCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCt                                                                                                <  1:23178/89‑1 (MQ=255)                                                                                                                  tCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCt                                                                                                >  2:23178/1‑89 (MQ=255)                                                                                                                  tCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAata                                   >  2:300313/1‑150 (MQ=255)                                                                                                                  tCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAata                                   >  2:853077/1‑150 (MQ=255)                                                                                                                   ccACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTcc                                         >  2:899403/1‑143 (MQ=255)                                                                                                                   ccACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTcc                                         <  1:899403/143‑1 (MQ=255)                                                                                                                    cacaCGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAg                                                                                                                            <  1:401067/59‑1 (MQ=255)                                                                                                                    cacaCGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAg                                                                                                                            >  2:401067/1‑59 (MQ=255)                                                                                                                       acGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGCCCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATataatc                              <  4:10048/150‑2 (MQ=255)                                                                                                                           tGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTg                          <  1:48289/150‑1 (MQ=255)                                                                                                                              gaTAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATa                       <  1:300313/150‑1 (MQ=255)                                                                                                                                   tGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAAttt                  <  4:490830/150‑1 (MQ=255)                                                                                                                                     aCCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACGTAGTAAAGCCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATTGAATACGTCATAAATTTcc                >  4:278784/1‑150 (MQ=255)                                                                                                                                      ccGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTc                                                                                               <  3:486248/70‑1 (MQ=255)                                                                                                                                      ccGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTc                                                                                               >  4:486248/1‑70 (MQ=255)                                                                                                                                      ccGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCt               >  4:452824/1‑150 (MQ=255)                                                                                                                                       cGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTc              >  4:227063/1‑150 (MQ=255)                                                                                                                                              ttCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTAtt       <  3:422600/150‑1 (MQ=255)                                                                                                                                                   cgcgGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAAt                    >  4:436123/1‑132 (MQ=255)                                                                                                                                                   cgcgGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAAt                    <  3:436123/132‑1 (MQ=255)                                                                                                                                                   cgcgGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCAt  >  3:80975/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GTAGCGTCGCGTGGTAAAAACTGGCCAGCATTGGCTCACAGTCCGCCAGCGTTCTGGCTTCGGCTTTAATATTGTTCCAGACAATTTCCAGTTCTTCACACGACATTGCTTACTCCACACGATGAGATAATGACCGGCCCGTTCTGCGCGGGCCGGGTCATAGCGGTAACAAAGGTTCCCTGGGGTTAGTGGCTGCTGCGCTCGTCCTTGCGTGCACGACCTAGTAAAGTCAATGCTGCCTCGCGCGCGTTTTTTCCGCAATATAATACTTGATAAATTTCCTCGGTTATTGGCAT  >  NC_000913_3_pae_tpiA/3782457‑3782752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.