New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4284971 =	45 (1.020)	5 (0.120)	5/278	5.6	10.1%	coding (159/315 nt)	yjcH	DUF485 family inner membrane protein
	?	NC_000913_3_pae_tpiA	4284993 =	45 (1.040)					coding (137/315 nt)	yjcH	DUF485 family inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTGTACCTCATGCAGGACTTCATTATTAAGACGGTCGAATTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAA  >  NC_000913_3_pae_tpiA/4284823‑4285116                                                                                                                                                     |                                                                                                                                                   cgtgtgCCTCATTGCGGACTTCATTATTAAGACGGTGTAATTCGCCTTGCGCCCGCCAGATGTAGATACCTGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTTGAATACCGCGTGTGACGCTGGTGTTCTGATTCAgcggc                                                                                                                                                    <  2:78329/147‑1 (MQ=255)           aTGCCGGAGTTCATTATTAAGTCGGTCTAATTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCACCGGCGTGCccagcc                                                                                                                                          >  2:563281/1‑149 (MQ=255)               agaaCTTCATTATGAATACTGTTGGAGTCGTCGTTAGCCCGCCACATTTAGATACAGGTGAGAACAAAGGAGATCACAATCACTCCAAGCCCAATTGGAATACCGCTTGTGACGCTTGTGTTCGGATTTAGCGGCGTGCCCagccagcc                                                                                                                                      <  2:373364/146‑1 (MQ=255)                ggACTTCATTATTAAGACGGTCGAATTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAAGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGACGTGCCCAGCCAGCCg                                                                                                                                     >  1:167277/1‑149 (MQ=255)                   cTTCATTATTAAGACGGTCGAATTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGgc                                                                                                                                  <  2:47046/149‑1 (MQ=255)                    ttCATTATTAAGACGGTCGAATTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAAGCACTCCAACACCAATTGGAATACCGCCGGTGACGCTGGTGGTCGGATTCAGTGGCGTGGCCAGCCAGCCAGgcg                                                                                                                                 >  1:67155/1‑149 (MQ=255)                                  ggTCGAATTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGACGGCGATCAGt                                                                                                                   >  1:676815/1‑149 (MQ=255)                                  ggTCGAATTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGt                                                                                                                   <  1:49403/149‑1 (MQ=255)                                        aTTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGaa                                                                                                                             <  2:77889/133‑1 (MQ=255)                                        aTTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGaa                                                                                                                             >  1:77889/1‑133 (MQ=255)                                                 gtgcccgtcAGATGCAGATACCGGTTAGAACAAAGGAGATCACCATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGata                                                                                                   <  2:193996/147‑1 (MQ=255)                                                     ccgccAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGAt                                                                                                                       <  1:314176/126‑1 (MQ=255)                                                     ccgccAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGAt                                                                                                                       >  2:314176/1‑126 (MQ=255)                                                     ccgccAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGata                                                                                                   <  2:703425/145‑1 (MQ=255)                                                     ccgccAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGata                                                                                                   >  1:703425/1‑145 (MQ=255)                                                       gccAGATGTAGATACCGGTGCGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACGGCGTGTGACGCTGGTGCTCGGATTCAGCGGCTTGCCCAGCCAGCCGGGCGCGAAGCCGATGAGTAAAATAA‑AGCCAATGTAAACt                                                                                             >  2:335658/1‑149 (MQ=255)                                                          aGATGTAGATGCCGGTGAGAACAAAGGAGATCACAATAACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGAGTTAGGATTCAGAGCCGTGCCCAGCGAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCAGATAGAAACTAcc                                                                                          >  2:678437/1‑149 (MQ=255)                                                            aTGTAGATATGGGGGGGGATAAGGGAGATTACAATCATTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCCGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGTCGATCAGTAAAATAA‑AGCCGATTTAAACTGCCAg                                                                                        <  2:332490/149‑1 (MQ=255)                                                              gTAGATACCGGTGAGAACAAAGGAGATCACAATCACCCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCa                                                                                      <  2:479726/149‑1 (MQ=255)                                                                       ggagagaACAAAGGCGATCACAATCACTCCAACACCAATTGGAATATCGCGTGTGACGCTGGTGGTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCAATATAACATGCCAGCATAATAATCg                                                                             >  2:769685/4‑149 (MQ=255)                                                                        gTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGa                                                                            >  1:754247/1‑149 (MQ=255)                                                                             aaCAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGa                                                                       <  2:754247/149‑1 (MQ=255)                                                                               cAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAACGCGAACAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGAtg                                                                     >  1:414266/1‑149 (MQ=255)                                                                                caaGGAAATCACAATCACTCCAACCACAATTGGAATACCGCGTGTTACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAATGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGAtgg                                                                    <  2:464223/148‑1 (MQ=255)                                                                                aaaGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGAtgg                                                                    >  1:518957/1‑149 (MQ=255)                                                                                 aaGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCGGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGAtggt                                                                   <  1:80486/149‑1 (MQ=255)                                                                                    gagaTCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGc                                                                >  1:537699/1‑149 (MQ=255)                                                                                             aTCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTg                                                       <  2:524906/149‑1 (MQ=255)                                                                                              tCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGc                                                      >  2:452073/1‑149 (MQ=255)                                                                                                  tCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATCAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGtt                                                  >  1:536957/1‑149 (MQ=255)                                                                                                  tCCAACACCAATTGGAATACCGCGGGTGACGCTGGGGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGtt                                                  >  1:425410/1‑149 (MQ=255)                                                                                                         caaaTTGGAAGACCGCGTGTGGCGCTGGGTTTCGGATGCAACTGGGTGCTCGGGCAGTCGGGCGCGGAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGAc                                           <  2:278796/147‑1 (MQ=255)                                                                                                           aaTTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACtc                                         >  2:697166/1‑148 (MQ=255)                                                                                                            aTTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAACAATCAAT‑GAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACAGTTGCCGTTTTTCGACTaa                                        >  1:181833/1‑149 (MQ=255)                                                                                                            aTTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCCAACCGTTGCCGTTTTTCGACTaa                                        >  2:149091/1‑149 (MQ=255)                                                                                                                gAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATaa‑a                                                                                                          <  1:759414/79‑1 (MQ=255)                                                                                                                gAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATaa‑a                                                                                                          >  2:759414/1‑79 (MQ=255)                                                                                                                    aCCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTGAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACGAACTCCCTGa                                >  1:755102/1‑149 (MQ=255)                                                                                                                    aCCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGa                                >  2:600722/1‑149 (MQ=255)                                                                                                                      cgcgTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGAc                                                                           >  2:750591/1‑104 (MQ=255)                                                                                                                      cgcgTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGAc                                                                           <  1:750591/104‑1 (MQ=255)                                                                                                                       gcgTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAAt                             <  2:537699/149‑1 (MQ=255)                                                                                                                                      gtTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTa              >  1:171719/1‑149 (MQ=255)                                                                                                                                             ttCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTg       >  1:356105/1‑149 (MQ=255)                                                                                                                                                  cggcgTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACCGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATaaa  <  2:651451/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CTTGTACCTCATGCAGGACTTCATTATTAAGACGGTCGAATTCGCCGTTCGCCCGCCAGATGTAGATACCGGTGAGAACAAAGGAGATCACAATCACTCCAACACCAATTGGAATACCGCGTGTGACGCTGGTGTTCGGATTCAGCGGCGTGCCCAGCCAGCCGGGCGCGAAGGCGATCAGTAAAATAA‑AGCCGATATAAACTGCCAGCATAATAATCGACAGGATGGTGGCAAACCGTTGCCGTTTTTCGACTAACTCCCTGAAATGCGCATTGTCTTCTATCCGCTGATAAA  >  NC_000913_3_pae_tpiA/4284823‑4285116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.