New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2347190 =	NA (NA)	5 (0.120)	5/268	5.4	NA	noncoding (31/203 nt)	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences
	?	NC_000913_3_pae_tpiA	= 3234723	NA (NA)					noncoding (86/86 nt)	REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

ATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACGATATACAG  >  NC_000913_3_pae_tpiA/3234581‑3234870                                                                                                                                               |                                                                                                                                                    aTGGTGTCAGGGACTTCTTGTTTTATGGAGGCGCGATTCCAGCACTGGGCAGACACTGCGGGGTGAGACGCTTGCCGCGTCTTATCCGGACTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTaa                                                                                                                                               <  2:28200/149‑1 (MQ=38)    gTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTc                                                                                                                                            <  1:415569/149‑1 (MQ=255)         aGGGATTTTTTGTTTTATTGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAAt                                                                                                                                       <  2:391726/149‑1 (MQ=255)           ggATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCt                                                                                                                                     >  1:74058/1‑149 (MQ=255)                     ttttATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCgccgac                                                                                                                           >  2:97840/1‑149 (MQ=255)                               gcgcGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAgg                                                                                                                                                  >  2:739155/1‑116 (MQ=255)                               gcgcGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAgg                                                                                                                                                  <  1:739155/116‑1 (MQ=255)                                cgcgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcga                                                                                                                               <  2:657944/134‑1 (MQ=255)                                cgcgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcga                                                                                                                               >  1:657944/1‑134 (MQ=255)                                cgcgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcga                                                                                                                               >  1:465266/1‑134 (MQ=255)                                cgcgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACcga                                                                                                                               <  2:465266/134‑1 (MQ=255)                                 gcgATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGGAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCa                                                                                                               <  1:732706/149‑1 (MQ=255)                                   gATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCAcc                                                                                                             <  2:160890/149‑1 (MQ=255)                                          gAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCa                                                                                                      <  1:634042/149‑1 (MQ=255)                                           aaCTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCAGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTAAg                                                                                                     >  2:639361/1‑149 (MQ=255)                                                        ttGCCGGATGCGACGCTTGGCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATtta                                                                                        <  2:191475/149‑1 (MQ=255)                                                        ttGCCGGATGAGACGCTGGCGGCGTCTGATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGCATAAGGCGTTTACGCCGCATCCTGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATtta                                                                                        <  2:15678/149‑1 (MQ=39)                                                        ttGCCGGACGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATtta                                                                                        <  1:491190/149‑1 (MQ=255)                                                          gCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATttatt                                                                                      <  1:203175/149‑1 (MQ=255)                                                              gATGCGACGGTTGCCGTGTCTTATCCGGCCTGGAGTAACGTGCCGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTTAGTACCACAAATTTATTATtc                                                                                  <  2:687520/149‑1 (MQ=255)                                                                 ggggcGCTTGCCGCGTCTTAGCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGCCGTCCCAGCTTCACCGCTTTCAGTACCACACATTTATTATtcgtc                                                                               <  2:706269/145‑1 (MQ=255)                                                                        ttGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAg                                                                        >  2:153960/1‑149 (MQ=255)                                                                           ccGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAgtgg                                                                     >  2:602710/1‑149 (MQ=255)                                                                                  ctATCCGGGCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTGTACGCCGCATCCGGCAGGTAACTCCCAATCGCACCGACGACGTCTCAGCTTTACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGtt                                                              <  2:773138/148‑1 (MQ=255)                                                                                          ccTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGaaaa                                                      <  2:74058/149‑1 (MQ=255)                                                                                               aGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAAtcttc                                                 <  2:281984/149‑1 (MQ=255)                                                                                               aGTAACGGGCTGAAGGGAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTGTTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAAtcttc                                                 <  2:329870/149‑1 (MQ=255)                                                                                                 tcaCGTGCTGAACGTAGGCCGGATAAGGCGTTTCCGCCGCATCCGGCAGGTAACTCTCAATCTTACCGACGACGTCGCCGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATcttctt                                               <  1:365877/147‑1 (MQ=255)                                                                                                 tAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTg                                                             <  2:563895/135‑1 (MQ=255)                                                                                                 tAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTg                                                             >  1:563895/1‑135 (MQ=255)                                                                                                   aCGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCa                                             <  1:153960/149‑1 (MQ=255)                                                                                                         tGAACGTAGGCCGGATAAGGCGTTTACGGCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTAt                                       <  2:750339/149‑1 (MQ=255)                                                                                                          gAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACAACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGAGGTGCAGTTGCCGAAAATCAACTTCAGGTTATg                                      >  2:21144/1‑149 (MQ=39)                                                                                                             cGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTTGCCTTCTGGGGGTAGTTGCCGAAAATCTTCTTCAGTTTATGGaa                                   <  1:769702/149‑1 (MQ=38)                                                                                                                  gCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACGGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTatt                              >  2:701226/1‑147 (MQ=255)                                                                                                                            gCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTCCCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTCTGGAAATGATCGAGGTGACg                    >  2:58957/1‑149 (MQ=255)                                                                                                                             cGTTTACGCCGCATCCGGCAGGTAACTCCCAATCGTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTAGTCGCAATAGTGGTGCTATTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACgg                   <  1:111747/149‑1 (MQ=255)                                                                                                                                aaaCGCCTTATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTg                <  1:196247/147‑1 (MQ=255)                                                                                                                                 tACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTgg               >  2:83183/1‑149 (MQ=255)                                                                                                                                       gcATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACGa         <  2:528916/149‑1 (MQ=255)                                                                                                                                              gCAGGTAACCCCCAATCTTACCGACGACGGCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACGATATACAg  <  1:467156/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    ATGGTGACAGGGATTTTTTGTTTTATGGAAGCGCGATTCCAGAACTGGGCAGACATTGCCGGATGCGACGCTTGCCGCGTCTTATCCGGCCTGGAGTAACGTGCTGAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGGTAACTCCCAATCTTACCGACGACGTCCCAGCTTCACCGCTTTCAGTACCACAAATTTATTATTCGTCGCAATAGTGGTGCAGTTGCCGAAAATCTTCTTCAGTTTATGGAAGTAATCCAGGTGACGGTTGGCAACGATATACAG  >  NC_000913_3_pae_tpiA/3234581‑3234870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.