New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2347190 =	NA (NA)	5 (0.120)	5/268	5.4	NA	noncoding (31/203 nt)	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences	REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences
	?	NC_000913_3_pae_tpiA	= 4460414	NA (NA)					noncoding (84/84 nt)	REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP338 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATCCGGGCTACCTAAATATCCGCACACGCGGCGAGTTACCGACA  >  NC_000913_3_pae_tpiA/4460267‑4460559                                                                                                                                                    |                                                                                                                                                  tgatgaTAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATTAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGCAGCAATTCCCAAGTGTACGCCGGACAAGGCCTTACCGCCTCTTCCGGcc                                                                                                                                                  >  2:114831/1‑148 (MQ=37)      atAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGc                                                                                                                                             <  1:510605/149‑1 (MQ=255)      atAATTCATTATGTCGCCTGGTTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGc                                                                                                                                             <  2:538238/149‑1 (MQ=255)          ttCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAg                                                                                                                                         <  1:216014/149‑1 (MQ=255)           tCATTATTTCGCCTGGCTTATCAGTACGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGCCCTGAAGCAATTGCCAACTCGAGGCCGGATAAGCCGTTTACTCCGCATCCGGCATTTGCTTCGc                                                                                                                                        >  1:342273/1‑149 (MQ=37)             attattTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTc                                                                                                                                      >  1:563699/1‑149 (MQ=255)               tattTCGCCTGGCTTATCAGTCAGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCag                                                                                                                                    >  2:285977/1‑149 (MQ=255)                attTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCaga                                                                                                                                   <  1:620745/149‑1 (MQ=255)                  ttCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGt                                                                                                                                 <  2:376727/149‑1 (MQ=255)                     gCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGaa                                                                                                                              <  1:666182/149‑1 (MQ=255)                        tGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGTCATTTGCTTAGCTCAGAGTGAAGAt                                                                                                                           >  1:765815/1‑149 (MQ=255)                         ggCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTAACAGCCCTGGACCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGAtt                                                                                                                          >  2:282965/1‑149 (MQ=255)                           cTTATCACTCCGCGTTGAGGCTGCATCCGGTAATCAATGCCCGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAACTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTaa                                                                                                                        <  2:700796/149‑1 (MQ=37)                           cTTAGCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTaa                                                                                                                        <  1:175281/149‑1 (MQ=255)                            ttATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAAc                                                                                                                       <  1:584519/149‑1 (MQ=255)                             tgtCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCCTTTGCTTACCTCAGAGTGAACATTAAcc                                                                                                                      >  2:119468/3‑149 (MQ=255)                              aTCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCt                                                                                                                     >  1:543580/1‑149 (MQ=255)                                 aGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATc                                                                                                                  >  1:247626/1‑149 (MQ=255)                                  gTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGACGATTAACctctct                                                                                                                 <  2:308454/149‑1 (MQ=255)                                            aGGCTGCATCCGCTAATCACTGGCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTccc                                                                                                       <  2:693006/149‑1 (MQ=255)                                              gCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCa                                                                                                     >  1:625277/1‑149 (MQ=255)                                                  cATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAACTg                                                                                                 >  1:34138/1‑149 (MQ=255)                                                   aTCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGt                                                                                                <  1:685319/149‑1 (MQ=255)                                                               atctcTGTTGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGCATAAGCCGTTTACGCCGCATCCGGCATTTCTTTAGCTCAGAGTGAAGCTTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGgcgc                                                                                    <  2:174978/145‑1 (MQ=38)                                                               aggCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGgcgc                                                                                    <  2:719621/147‑1 (MQ=255)                                                                    tGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATATAGGAGTTATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAAc                                                                               <  1:344255/149‑1 (MQ=255)                                                                           aCGCTGGCGGGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACTCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATTTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTcc                                                                        <  2:695093/149‑1 (MQ=255)                                                                                    cgTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCa                                                               >  1:36395/1‑149 (MQ=255)                                                                                          aTCAGACCTGGAGCAATTGCCAAAGGTAGGCTGGGTAAGGCGTTTAAGCAGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAAAGCGGCGCTTAGCTTCTTCCTGCTTACCAGCGTTa                                                         >  2:715837/1‑149 (MQ=255)                                                                                           tCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGCAGATTAACCTATAGACCCATGCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTaa                                                        >  1:762984/1‑149 (MQ=39)                                                                                           tCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTaa                                                        >  1:395136/1‑149 (MQ=255)                                                                                               aCCTGGAGTAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACgg                                                    <  1:732943/149‑1 (MQ=255)                                                                                                 cTGGAGCAATTGCCAAATGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCTCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGAc                                                  <  2:444492/149‑1 (MQ=255)                                                                                                   ggAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGt                                                <  1:285977/149‑1 (MQ=255)                                                                                                         aTTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATcc                                          >  1:597026/1‑149 (MQ=255)                                                                                                            gCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCATCGTTAAAAGCACATGCATCCggg                                       >  2:280037/1‑149 (MQ=255)                                                                                                            gCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATCCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATCCggg                                       >  2:394939/1‑149 (MQ=255)                                                                                                               aaaTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAAc                                                                               >  2:709300/1‑106 (MQ=255)                                                                                                               aaaTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAAc                                                                               <  1:709300/106‑1 (MQ=255)                                                                                                               aaaTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATCCGGGCTa                                    >  1:70999/1‑149 (MQ=255)                                                                                                                        ccGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATCCGGGCTACCtgactag                           >  1:27235/1‑143 (MQ=255)                                                                                                                            aTAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATCCGGGCTACCTAAATATCCGc                       >  1:456157/1‑149 (MQ=255)                                                                                                                                   gTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATCCGGGCTACCTAAATATCCGCACAcgcg                >  1:326654/1‑149 (MQ=255)                                                                                                                                    tttACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTa                                                                                 >  2:674946/1‑83 (MQ=255)                                                                                                                                    tttACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTa                                                                                 <  1:674946/83‑1 (MQ=255)                                                                                                                                    tttACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATCCGGGCTACCTAAATATCCGCACACgcgg               <  1:155254/149‑1 (MQ=255)                                                                                                                                       aCGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATCCGGGCTACCTAAATATCCGCACACGCGGCGa            <  2:631700/149‑1 (MQ=255)                                                                                                                                       aCGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATCCGGGCTACCTAAATATCCGCACACGCGGCGa            <  1:366088/149‑1 (MQ=255)                                                                                                                                            gcATCTGGCATTTGGTTAGCGCAGTGTGAAGATTAGCCTATCTGCCCATTCCCTCAATGTTTAACGCGGCGCTTACCTTCTTCCTGCTTACCCGCGTTAAACGGACGTGCATCCGGGCTGTCTAAGTATTTGCACACGGGGCGAGTTAc       <  2:171712/149‑1 (MQ=255)                                                                                                                                               tCCGGTATTTGATTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATCCGGGCTACCTAAATATCCGCACACGCGGCGAGTTACCGa    <  2:209357/149‑1 (MQ=255)                                                                                                                                                 cGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATCCGGGCTACCTAAATATCCGCACACGCGGCGAGTTACCGaca  <  2:456157/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TGATGATAATTCATTATTTCGCCTGGCTTATCAGTCCGCGTGTAGGCTGCATCCGGTAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGACCTGGAGCAATTGCCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTGCTTAGCTCAGAGTGAAGATTAACCTATCTGCCCATTCCCCAAATGTTTAACGCGGCGCTTAACTTCTTCCTGCTTACCAGCGTTAAACGGACGTGCATCCGGGCTACCTAAATATCCGCACACGCGGCGAGTTACCGACA  >  NC_000913_3_pae_tpiA/4460267‑4460559

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.