| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 4385264 = | 144 (1.010) | 18 (0.140) | 17/244 | 13.0 | 11.9% | intergenic (+7/‑45) | yjeM/yjeN | putative transporter/uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 4385291 = | 134 (1.020) | intergenic (+34/‑18) | yjeM/yjeN | putative transporter/uncharacterized protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGCATCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/4385423‑4385264‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgatagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGCCTGCCACACCCGTAAAG > NC_000913_3_pae_tpiA/4385291‑4385438 AGGCATCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAG > 3:781026/1‑150AGGCATCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAG > 2:1336391/1‑150 GGCATCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGA < 2:432339/150‑1 GCATCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGAC > 2:1573983/1‑150 CATCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG > 1:1044260/1‑150 CATCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACG > 1:1321230/1‑150 ATCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGA > 3:546917/1‑150 ATCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGA < 3:420471/150‑1 ATCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGA > 2:491330/1‑150 ATCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGA > 1:207763/1‑150 GACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAG < 1:139417/150‑1 ACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGG > 4:335395/1‑150 AAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC > 1:407500/1‑150 TGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGA > 2:568446/1‑125 TGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGA < 1:568446/125‑1 GCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGCATAAAGACAGGAAATGT < 4:808486/150‑1 CGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGG‑‑‑‑‑‑‑TAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCA < 3:233139/150‑1 TCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGA < 1:1521616/77‑1 TCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGA < 1:1521832/77‑1 TCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGA > 2:1521616/1‑77 TCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGA > 2:1521832/1‑77 CCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGG > 1:1550405/1‑150 CATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATA > 2:1085331/1‑150 ATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAG < 1:1085331/150‑1 AACATTGCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAG > 4:782038/1‑150 TTTACGCCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGG > 1:524616/1‑98 TTTACGCCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGG < 2:524616/98‑1 ACGCCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTT > 1:891540/1‑150 CCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCG < 4:725617/68‑1 CCCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCG > 3:725617/1‑68 CCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTT > 1:1648242/1‑148 CCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTT < 2:1648242/148‑1 CCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCA < 3:192050/99‑1 CCTATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCA > 4:192050/1‑99 ATCGTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGA > 1:950681/1‑150 GTCAGGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATCACTCCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGC < 3:782038/150‑1 GGTAGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGCCTGC < 2:891540/150‑1 ACGATAGGGCGTAAAGACAGGACATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGCAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCGCTCTTTTGTCGATGCCTGCCACAC < 2:920574/150‑1 ACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGCCTGCCACAC < 1:1426508/150‑1 AGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGCCTGCCACACCCGTA > 3:565035/1‑150 AGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTC < 3:365519/122‑1 AGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTC > 4:365519/1‑122 GGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGCCTGCCACACCCGTAA > 2:580904/1‑150 GGCTTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGCCTGCCACACCCGTAAA > 1:1629226/1‑150 GGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGCCTGCCACACCCGTAAA > 4:574395/1‑150 GCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGCCTGCCACACCCGTAAAG > 1:679476/1‑150 GCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTT > 3:444674/1‑125 GCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTT < 4:444674/125‑1 CGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATA < 1:566971/103‑1 CGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATA > 2:566971/1‑103 AGGCATCGACAAAAGAGAGAATCGTCTGCTCTATTTCCGCTACATCCCCGGCAGAAAATTGCAGCGCCCTGATTTCATCTTCGGTTATTGCCGGGTCCCGGCTGGTGTCATCCATAACATTTCCTGTCTTTACGCCCTATCGTCAGGTAGACGATAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/4385423‑4385264‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgatagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGCCTGCCACACCCGTAAAG > NC_000913_3_pae_tpiA/4385291‑4385438 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |