| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 183652 = | 132 (0.920) | 14 (0.110) | 14/246 | 14.5 | 10.7% | intergenic (+32/+57) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein |
| ? | NC_000913_3_pae_tpiA | 183685 = | 112 (0.850) | intergenic (+65/+24) | cdaR/yaeH | carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTAAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/183810‑183652‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggggaatgCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCGGTCACGCT > NC_000913_3_pae_tpiA/183685‑183833 CTTAAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTG > 4:356534/1‑150 AAGCGTAAGATCCTCGACGACTTACTTCACCTGGAGTCAGTCGTATCCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAATCTAACGCGTAAATAATCCCGAACTGACGGTTATTTCGGGCATTCCCCTCTACCCTTCGGGCTGAGG > 1:505938/1‑150 AAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGG < 4:17821/150‑1 AAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGG < 1:650984/150‑1 AGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGCTCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGG < 2:1025304/150‑1 TAAGATCCTCGACGACGTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAAT > 2:859123/1‑150 CTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCACGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGG > 4:560600/1‑139 CTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCACGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGG < 3:560600/139‑1 CACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGA > 1:971373/1‑126 CACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGA < 2:971373/126‑1 CGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGA > 1:628461/1‑89 CGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGA < 2:628461/89‑1 CGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATC > 2:1637161/1‑124 CGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATC < 1:1637161/124‑1 TTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAG < 4:237658/142‑1 TTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAG > 3:237658/1‑142 GCATTCCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGA < 1:764582/83‑1 GCATTCCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGA > 2:764582/1‑83 TTCCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATT < 1:151138/106‑1 TTCCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATT > 2:151138/1‑106 CCCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCCGTTCGGGATTATTTACGCGGTAGTGTTTCCAGATCGGCTTCAATCTCGCTGAGCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGC > 4:713398/1‑150 CCCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCT > 3:49238/1‑150 CCTCTACCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTT > 3:493740/1‑150 CCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCC < 2:188753/67‑1 CCCTTCGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCC > 1:188753/1‑67 CGGGCTGAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTT < 4:493740/150‑1 GAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACT > 3:805781/1‑95 GAGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACT < 4:805781/95‑1 AGGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCG < 2:123195/150‑1 GGGGAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCGG < 4:826407/150‑1 GAATGCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCGGTCA < 1:1025304/150‑1 GCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCGGTCACGCT < 3:102301/150‑1 CTTAAGCGTAAGATCCTCGACGACTTACGTCACCTGGAGTCAGTCGTAACCAATAAGATCAGCGAGATTGAAGCCGATCTGGAAAAACTAACGCGTAAATAATCCCGAACTGACGGTTAATTCGGGCATTCCCCTCTACCCTTCGGGCTGAGGGGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/183810‑183652‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaggggaatgCCCGAATTAACCGTCAGTTCGGGATTATTTACGCGTTAGTTTTTCCAGATCGGCTTCAATCTCGCTGATCTTATTGGTTACGACTGACTCCAGGTGACGTAAGTCGTCGAGGATCTTACGCTTAAGATCAACTTCGCTGCGGTCACGCT > NC_000913_3_pae_tpiA/183685‑183833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |