| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1757082 = | 5 (0.090) | 49 (0.840) | 45/278 | 0.4 | 90.7% | coding (1385/1413 nt) | pykF | pyruvate kinase I |
| ? | NC_000913_3_pae_tpiA | 2101749 = | NA (NA) | intergenic (‑5/+146) | wbbL/insH1 | pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator | |||||
GATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/1757230‑1757082‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTT > NC_000913_3_pae_tpiA/2101749‑2101893 GATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGG < 3:3857/150‑1GATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGG > 3:153773/1‑150 ATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGG < 3:61456/150‑1 AAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAG < 2:395832/150‑1 GAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGC < 1:579842/150‑1 AGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCG > 2:310754/1‑150 AGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGG < 2:533445/150‑1 GAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGA > 1:407718/1‑150 CGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCT > 2:82181/1‑150 GATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGG < 3:155632/150‑1 TTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCT > 3:239339/1‑150 TTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG > 3:268649/1‑150 TTTTATTGCTTCTGGTTATAGAAAAAAAAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGA < 2:540474/150‑1 TTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAG < 2:399709/150‑1 TTCTGGTTATCGATTAAATAAAAAAAGTGCCTATCAGGGCGCTTCGATATACTAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGATTTTCTTCTCGGGTGACTCAGTCAT < 2:553296/150‑1 TTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGACATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATT > 2:253012/1‑150 GATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC > 1:580979/1‑150 GATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGAGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC > 2:242769/1‑150 TTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAT < 1:499073/150‑1 TAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTG < 4:46369/150‑1 AAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATGTCATTTCTTCATGTTTGA > 2:282791/1‑150 AAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG > 1:23523/1‑150 AAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGC > 2:84237/1‑150 AAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGA > 2:287599/1‑150 CCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTT < 1:310754/150‑1 CCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTT > 4:16159/1‑150 cGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCC < 1:348554/149‑1 GGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCG < 2:564597/150‑1 GCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTA < 3:309880/150‑1 CTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAT > 1:560698/1‑150 TTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATG > 4:54436/1‑150 TCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGC < 3:350342/150‑1 ACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAT < 4:49903/150‑1 CAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCT < 2:459290/83‑1 CAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCT > 1:459290/1‑83 AATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAG > 2:441322/1‑150 ATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGC < 2:227334/150‑1 AATATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTC < 2:69871/150‑1 TATTACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTT < 1:82181/150‑1 TACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGC < 4:239339/150‑1 TACAGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGC < 1:84237/150‑1 AGGACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAT > 2:129353/1‑150 GACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTC < 1:41705/143‑1 GACGTGAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTC > 2:41705/1‑143 GAACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGC > 1:86840/1‑150 AACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGC > 1:538652/1‑107 AACAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGC < 2:538652/107‑1 CAGATGCGGTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTT < 3:127581/150‑1 GTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTT < 4:284859/150‑1 GATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/1757230‑1757082‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTT > NC_000913_3_pae_tpiA/2101749‑2101893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |