New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2476567	65 (0.990)	4 (0.060)	4/266	9.1	6.1%	intergenic (+57/‑17)	torI/pawZ	response regulator inhibitor for tor operon/tRNA‑OTHER
	?	NC_000913_3_pae_tpiA	= 2476585	62 (1.000)					pseudogene (2/15 nt)	pawZ	tRNA‑OTHER
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAAGCCAAAGTTATCCACGGGCGAGCAAGATGGTTATATCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTATGAAGTGGTTTTTACCTGT  >  NC_000913_3_pae_tpiA/2476420‑2476715                                                                                                                                                    |                                                                                                                                                     aaaaGCCAAAGTTATCCACAAGCGCGAAAGATGGTTCTATCGTGACCCTTGTGTATGCACAAATAAGCGCTTGAGTCGCCGCAACGGGTAAAATAGCGGAAAAAATATTTCTAACACACAAAACACACCATTCAATTCAACCCactact                                                                                                                                                     >  2:498382/1‑149 (MQ=255)       cAAAGTTATCCACGGGCGAGCAAGATGATGATATCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCa                                                                                                                                               >  2:681049/1‑149 (MQ=255)        aaaGTTATCCACGGGCGAGCAAGATGGTTATATCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAACGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCaa                                                                                                                                              >  2:169620/1‑149 (MQ=255)        aaaGTTATCCACGGGCGAGCAAGATGGTTATATAGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCaa                                                                                                                                              >  2:792833/1‑149 (MQ=255)               tCCACGGGCGAGCAAGATGGTTATATCGTGACCATTGTGAATTCAAAGATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATg                                                                                                                                       <  1:825757/149‑1 (MQ=255)                 cACGGGCGAGCAAGATGGTTATATCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTCAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATACCAATCAATCCCCTGCTGCTTCACGTAGCTGTc                                                                                                                                     >  2:608784/1‑149 (MQ=255)                            aaGAGGGTTTTACCGTGGACATTGTTAATTGAAAAATGAACCCTAAAACCGGGCCAAAGGGCGAAATAGGGGGTAACATATGTCTCACAAGTAAAAAACACCATTCCAATCAACCCCCTGCTGCTTCAAGTAAATTTCTGCAGGGGaca                                                                                                                          <  2:171308/149‑1 (MQ=255)                             aGATGTTTATATCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGacac                                                                                                                         <  2:939240/149‑1 (MQ=255)                                 ggTTATATCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATc                                                                                                                     <  1:792833/149‑1 (MQ=255)                                   ttATATCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATGTTTCTCACATCTAAAAAACACCATTACAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCt                                                                                                                   >  1:275840/1‑149 (MQ=255)                                    tataTCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCtt                                                                                                                  <  2:151776/149‑1 (MQ=255)                                    tataTCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCtt                                                                                                                  >  1:343808/1‑149 (MQ=255)                                    tataTCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAACGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCtt                                                                                                                  <  1:169620/149‑1 (MQ=255)                                      tatCGTGACCATTGTGAATGCAAAAATAAGCTCTTAAGCGGCGCCACTGGGTAAAATAGCGAGTAAAATATTGCGCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTtgt                                                                                                                <  2:674516/149‑1 (MQ=255)                                      tatCGTGACCATTGTGAAATCAAAAATAAGCTCTTAAGCCGCTCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTtgt                                                                                                                <  2:326609/149‑1 (MQ=255)                                        tCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTgtgt                                                                                                              <  1:163181/149‑1 (MQ=255)                                        tCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCAGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGCACACCATCCTTgtgt                                                                                                              >  1:1078287/1‑149 (MQ=255)                                              ccATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAACAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATcc                                                                                                        <  1:634079/149‑1 (MQ=255)                                                    tgAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTaaaa                                                                                                  >  2:747083/1‑149 (MQ=255)                                                    tgAAATCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTaaaa                                                                                                  >  2:842343/1‑149 (MQ=255)                                                       aTTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACca                                                                                               <  1:801249/149‑1 (MQ=255)                                                           acaaaTAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACGATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCACCCTTTTTTTTATCCCTAAACCCACATa                                                                                           >  2:1018550/3‑149 (MQ=255)                                                           aaaaaTAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATACGCTGTCTCGTCAAGTAGATGTCTGCAGGGGACACAATCCTTGTGTTTATCCCTAAAACCACATa                                                                                           >  1:256978/1‑149 (MQ=255)                                                               aTAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATaaaaa                                                                                       <  2:796245/149‑1 (MQ=255)                                                                 aaGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAAcc                                                                                     <  1:785831/149‑1 (MQ=255)                                                                 aaGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAAcc                                                                                     <  1:841468/149‑1 (MQ=255)                                                                    ctctTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGta                                                                                  >  1:444297/1‑149 (MQ=255)                                                                     tctTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGtaa                                                                                 <  1:681049/149‑1 (MQ=255)                                                                      ctTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGtaaa                                                                                <  1:698509/149‑1 (MQ=255)                                                                      cctAAGCCGCGCCAACGGGTAAAATAGCGGGTAAAATCTTTATCACATCTAAAATACACCATTCCAATCAATCCCCTGCTGCATCATTTTTATGTTTGCAGTGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGtaaa                                                                                <  1:925487/147‑1 (MQ=255)                                                                           gCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGtaaattaaa                                                                           >  2:482969/1‑149 (MQ=255)                                                                           gCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACAATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGtaaattaaa                                                                           >  2:946478/1‑149 (MQ=255)                                                                              gcgcCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTc                                                                        <  1:1024009/149‑1 (MQ=255)                                                                                   aaTGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTACATTAAATTCGACCt                                                                   >  2:993219/1‑149 (MQ=255)                                                                                      gggTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGc                                                                <  1:747083/149‑1 (MQ=255)                                                                                        gTAAAATAGCGGGTAAACTATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAg                                                              <  1:922441/149‑1 (MQ=255)                                                                                        gTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCg                                                                                    <  1:532394/127‑1 (MQ=255)                                                                                        gTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCg                                                                                    >  2:532394/1‑127 (MQ=255)                                                                                        gTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCACTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAg                                                              >  1:447828/1‑149 (MQ=255)                                                                                                  gggTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAAATAGCAGGCCGAATAAg                                                    >  1:142549/1‑149 (MQ=255)                                                                                                            tttCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAgg                                          <  2:444297/149‑1 (MQ=255)                                                                                                                tcACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAATTCACGTCTTTAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGCAca                                      >  2:1011882/1‑148 (MQ=255)                                                                                                                  acaTCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTCAAACAGGATCAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCg                                    >  1:534478/1‑149 (MQ=255)                                                                                                                    aTCTAAACAACACCATGCCAAGCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTg                                  <  2:139464/149‑1 (MQ=255)                                                                                                                    aTCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTg                                  >  1:159305/1‑149 (MQ=255)                                                                                                                    aTCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTg                                  >  1:184504/1‑149 (MQ=255)                                                                                                                    aTCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTg                                  >  2:582127/1‑149 (MQ=255)                                                                                                                    aTCCAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTg                                  <  2:69024/149‑1 (MQ=255)                                                                                                                       tAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGCCCGAATAAGGCACACCAGGAACTCGTGGtt                               >  2:1079998/1‑149 (MQ=255)                                                                                                                        aaaaaaCACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGttt                              >  2:628692/1‑149 (MQ=255)                                                                                                                               acCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGCTTTATTCAt                       >  2:489202/1‑149 (MQ=255)                                                                                                                                 cATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATTCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTa                     >  2:1039651/1‑149 (MQ=255)                                                                                                                                  aTTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTAt                    >  1:112571/1‑149 (MQ=255)                                                                                                                                   ttCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTATg                   >  1:132851/1‑149 (MQ=255)                                                                                                                                   ttCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTATg                   <  2:159305/149‑1 (MQ=255)                                                                                                                                      caatcaatCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTATGAAg                >  1:1085890/1‑149 (MQ=255)                                                                                                                                      caatcaatCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATGAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTATGAAg                <  2:353363/149‑1 (MQ=255)                                                                                                                                         tcaatcCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTATGAAGTgg             <  2:275840/149‑1 (MQ=255)                                                                                                                                         tcaatcCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTATGAAGTgg             <  2:132851/149‑1 (MQ=255)                                                                                                                                           aatcCCCTGCTGCTTCAATTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAATCCTCATAAAAACCGTAAATTAAATTCTAATTAGCACGCCGAATAAGGCACACCTGGAACTCTTGGTTTTATTCATTATGAAGTGGtt           <  2:370065/149‑1 (MQ=255)                                                                                                                                           aatcCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACGAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTATGAAGTGGtt           <  2:704908/149‑1 (MQ=255)                                                                                                                                               cccTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCCTTATGAAGTGGTTTTTa       >  2:436960/1‑149 (MQ=255)                                                                                                                                               cccTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTATGAAGTGGTTTTTa       <  2:184504/149‑1 (MQ=255)                                                                                                                                                ccTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTATGAAGTGGTTTTTAc      <  2:123519/149‑1 (MQ=255)                                                                                                                                                    ctgctTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTATGAAGTGGTTTTTACCTGt  <  1:1100591/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     AAAAGCCAAAGTTATCCACGGGCGAGCAAGATGGTTATATCGTGACCATTGTGAATTCAAAAATAAGCTCTTAAGCCGCGCCAATGGGTAAAATAGCGGGTAAAATATTTCTCACATCTAAAAAACACCATTCCAATCAATCCCCTGCTGCTTCAAGTAGATGTCTGCAGGGGACACCATCCTTGTGTTTATCCCTAAAACCACATAAAAACCGTAAATTAAATTCGAACTAGCAGGCCGAATAAGGCACACCAGGAACTCGTGGTTTTATTCATTATGAAGTGGTTTTTACCTGT  >  NC_000913_3_pae_tpiA/2476420‑2476715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.