New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3802387 =	63 (0.960)	3 (0.060)	3/230	8.8	5.7%	coding (672/1020 nt)	waaO	UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase
	?	NC_000913_3_pae_tpiA	3802413 =	48 (0.900)					coding (646/1020 nt)	waaO	UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATAAAAATAGTATCGTTGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCGGAGTTAAAGTAACCTTTAGCAATTCCCGCAACACCTAACGAATGGGCGCGTTTT  >  NC_000913_3_pae_tpiA/3802267‑3802561                                                                                                                                                   |                                                                                                                                                     gATAAAAATAGTATCGTTGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCTACATATTTAACCCATCCTGATCAGGATGTGTTGttt                                                                                                                                                    >  1:230549/1‑149 (MQ=255) gATAAAAATAGTATCGTTGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTAtgt                                                                                                                                                    >  1:281012/1‑147 (MQ=255)   tAAAAAGAGTATCGTTGGTTACTGGGTTTCAACAGCTTGCCGTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTGAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTAttttt                                                                                                                                                  <  1:205295/149‑1 (MQ=255)    aaaaaTAGTATCGTTGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTAtttttt                                                                                                                                                 <  2:985966/149‑1 (MQ=255)     aaaaTAGTATCGTTGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTAttttttt                                                                                                                                                <  1:801331/149‑1 (MQ=255)      aaaTAGTATCGTTGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGCTCTGTTATTTTTTTg                                                                                                                                               >  1:298607/1‑149 (MQ=255)         tAGTATCGTTGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGatt                                                                                                                                            <  1:634057/149‑1 (MQ=255)              tCGTTGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGTTTATTTc                                                                                                                                       >  2:82270/1‑149 (MQ=255)              tCGTTGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTc                                                                                                                                       <  1:947120/149‑1 (MQ=255)               cGTTGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTCTTTTTTTGATTATTTCt                                                                                                                                      >  2:516562/1‑149 (MQ=255)                 ttGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCt                                                                                                                                      >  1:110854/1‑147 (MQ=255)                 ttGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCt                                                                                                                                      <  2:110854/147‑1 (MQ=255)                 ttGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTgg                                                                                                                                    <  1:259373/149‑1 (MQ=255)                 ttGGTTACTGGGTGTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCGGCGAAAATAAGTTTATCCGCCAGCGACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGAGTATTTCTgg                                                                                                                                    >  2:581853/1‑149 (MQ=255)                        cTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATACTGATCAGGATGTGTTATTTTTTTGATTCTTTCTGGCTCAttt                                                                                                                             >  2:255903/1‑149 (MQ=255)                         tGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTa                                                                                                                            >  1:82191/1‑149 (MQ=255)                          gggTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAg                                                                                                                           <  2:773276/149‑1 (MQ=255)                              ttATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCAtt                                                                                                                       >  2:754759/1‑149 (MQ=255)                               tataAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTg                                                                                                                      <  2:193758/149‑1 (MQ=255)                                   aaGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCATGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAAt                                                                                                                  >  2:93692/1‑149 (MQ=255)                                      ctttctttGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTGTTTCTGGCTCCTTTAGCATTGCAATAGc                                                                                                               >  1:415376/1‑149 (MQ=255)                                      ctttctttGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGc                                                                                                               >  1:1045917/1‑149 (MQ=255)                                       tttctttGAGTTGATAATTTAAGCTGACATCGGGGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCCACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTTTTTATTTTTTTCTAATTTAGCGTTTCAATAACt                                                                                                              >  2:1069170/1‑149 (MQ=255)                                             tGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTTTGGCTCATTTAGCATTGCAATAGCTCGTGCa                                                                                                        >  1:272750/1‑149 (MQ=255)                                                   gATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTGCGGGCTCATTTAGCATTGCAATAGCGCGTGCAGAAAcc                                                                                                  >  1:1058948/1‑149 (MQ=255)                                                         ttAAGCTGAACTGGGGGTTATATTTAATATCAGCGACAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCCGGATGTGTTATTTTTTTGATTATTTCGGGCTCACTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGa                                                                                            <  2:100440/149‑1 (MQ=255)                                                          tAAGCTGAACGGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAg                                                                                           <  2:778532/149‑1 (MQ=255)                                                            aGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAgcc                                                                                         <  2:188749/149‑1 (MQ=255)                                                                   cTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTGGCCTCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCAtt                                                                                  <  2:1058948/149‑1 (MQ=255)                                                                         gtTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAg                                                                            >  2:109487/1‑149 (MQ=255)                                                                           tataTTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTa                                                                          <  1:86522/149‑1 (MQ=255)                                                                             tatTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACAACCTCGTCGCCAGTTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTAtt                                                                        <  1:256473/149‑1 (MQ=255)                                                                                ttAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAAt                                                                     <  2:578511/149‑1 (MQ=255)                                                                                   atatCAGCGAAAATAAGTTTATCCGCAAAAAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCaa                                                                  <  2:230549/149‑1 (MQ=255)                                                                                         gCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATaaaaa                                                            >  1:599500/1‑149 (MQ=255)                                                                                             aaaTATGTTTAGCCTCCATCCACATATTTACCGAATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCg                                                        <  2:1096165/149‑1 (MQ=255)                                                                                                   gTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCGGAGTTa                                                  >  2:707528/1‑149 (MQ=255)                                                                                                    tttATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTAGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCGGAGTTaa                                                 >  1:726871/1‑149 (MQ=255)                                                                                                      tATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCGGAGTTAAAg                                               <  1:707528/149‑1 (MQ=255)                                                                                                          cGCCAGCAACATATTTAACACATCCTGATCATGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCGGAGTTAAAGTAAc                                           <  1:93692/149‑1 (MQ=255)                                                                                                           gCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCGGAGTTAAAGTAAcc                                          >  1:667648/1‑149 (MQ=255)                                                                                                             catcAACATTTTTAACACATCTTGATCAGGATGTGTTATTTTTGTGATTATTTCTGGCTCATGTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCGGAGTTAAAGTAACCtt                                        <  2:181502/146‑1 (MQ=255)                                                                                                               gCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCGGAGTTAAAGTAACCTTTa                                      <  1:109487/149‑1 (MQ=255)                                                                                                                      atTTAACACATCCTGAGCAGGATTTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCGGAGTTAAAGTAACCTTTAGCAATTc                               <  2:281012/149‑1 (MQ=255)                                                                                                                      atTTAACACATCCTGACCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCg                                                        >  1:154762/1‑124 (MQ=255)                                                                                                                      atTTAACACATCCTGACCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCg                                                        <  2:154762/124‑1 (MQ=255)                                                                                                                       tttAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTg                                                                                                          >  2:226917/1‑73 (MQ=255)                                                                                                                       tttAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTg                                                                                                          <  1:226917/73‑1 (MQ=255)                                                                                                                                                   tttttttGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAACCGCCCATTGGGCAGTATTAATCAATAAAAAACCGGAGTTAAAGTAACCTTTAGCAATTCCCGCAACACCTAACGAATGGGCGCGtttt  >  1:157534/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GATAAAAATAGTATCGTTGGTTACTGGGTTTATAAAGCTTTCTTTGAGTTGATAATTTAAGCTGAACTGGGTGTTATATTTAATATCAGCGAAAATAAGTTTATCCGCCAGCAACATATTTAACACATCCTGATCAGGATGTGTTATTTTTTTGATTATTTCTGGCTCATTTAGCATTGCAATAGCTCGTGCAGAAACCTGCTGAGCCGCCCATTGGGCAGTATTAATCAATAAAAAACCGGAGTTAAAGTAACCTTTAGCAATTCCCGCAACACCTAACGAATGGGCGCGTTTT  >  NC_000913_3_pae_tpiA/3802267‑3802561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.