New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 1263650 =58 (0.910)41 (0.660) 35/252 1.3 39.1% intergenic (‑150/‑64) lolB/hemA lipoprotein localization factor/glutamyl tRNA reductase
?NC_000913_3_pae_tpiA = 1263818 71 (1.140)coding (105/1257 nt) hemA glutamyl tRNA reductase

Only 100 of 114 total aligned reads displayed.

GCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTAATGAAGAAGATCTGC  >  NC_000913_3_pae_tpiA/1263669‑1263966
                                                                                                                                                     |                                                                                                                                                    
gCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTg                                                                                                                                                      <  2:287416/150‑1 (MQ=255)
gCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTg                                                                                                                                                      <  1:268404/150‑1 (MQ=255)
     cAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTgc                                                                                                                                                 >  1:49101/1‑150 (MQ=255)
        aCTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCa                                                                                                                                              <  1:46984/150‑1 (MQ=255)
          tAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatc                                                                                                                                            >  4:233004‑M2/1‑140 (MQ=255)
            aCCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcct                                                                                                                                          >  1:688019‑M2/1‑138 (MQ=255)
                tATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATgg                                                                                                                                      >  3:393912/1‑150 (MQ=255)
                  tCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTg                                                                                                                                    <  1:456011/150‑1 (MQ=255)
                       gTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaa                                                                                                                               <  3:104356‑M2/150‑24 (MQ=255)
                       gTTGGTATCATTCCCCGCTGACATGGCCCTTTGGGCTCTCGGTATCAACCATAAAGCGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAggg                                                                                                                               <  1:554324/150‑1 (MQ=255)
                         tGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGggcg                                                                                                                             >  1:356358/1‑150 (MQ=255)
                           gTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGggcggc                                                                                                                           >  1:618374/1‑150 (MQ=255)
                              ttattTCCCGCAGCCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGCTCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCgtg                                                                                                                        >  2:694698/1‑150 (MQ=255)
                                attTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAGCGGCACCTGTATCGCTGCGAGAACGTGTATCGTGTTCGCTGGATAAGCTGGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaa                                                                                                                      >  2:35377‑M2/1‑118 (MQ=255)
                                 tttCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaac                                                                                                                     >  4:104356‑M2/1‑117 (MQ=255)
                                 tttCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtat                                                                                                                                      <  2:101967‑M2/133‑17 (MQ=255)
                                 tttCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtat                                                                                                                                      >  1:101967‑M2/1‑117 (MQ=255)
                                 tttCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCgtggtg                                                                                                                     >  1:75834/1‑150 (MQ=255)
                                    cccGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgta                                                                                                                                       <  2:663905‑M2/129‑16 (MQ=255)
                                    cccGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgta                                                                                                                                       >  1:663905‑M2/1‑114 (MQ=255)
                                    cccGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgta                                                                                                                                       >  1:664169‑M2/1‑114 (MQ=255)
                                     ccGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGt                                                                                                                 >  1:106464/1‑150 (MQ=255)
                                      cGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTc                                                                                                                <  2:75834/150‑1 (MQ=255)
                                             aTGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgtt                                                                                                         >  1:537944‑M2/1‑105 (MQ=255)
                                              tGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCGGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCa                                                                                                        >  1:568531/1‑150 (MQ=255)
                                                  ccTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGc                                                                                                         >  4:67090/1‑145 (MQ=255)
                                                  ccTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGc                                                                                                         <  3:67090/145‑1 (MQ=255)
                                                   cTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGggcggc                                                                                                                           >  2:309075/1‑126 (MQ=255)
                                                   cTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGggcggc                                                                                                                           <  1:309075/126‑1 (MQ=255)
                                                    ttttAGCTCTCGGTATCAACCATACAGCGGCCCCCGTATCGTTGCGCGACCGTGTATCGTTTTCGCTGCACAAGCTCGATCAGGCGCCTGACATCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtatta                                                                                                  >  4:191567‑M2/1‑98 (MQ=255)
                                                    ttttAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCa                                                                                                  <  3:285116/150‑1 (MQ=255)
                                                    ttttAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTACACGGCGGCGCGGTGCCGTCGACGGGCGACCGCa                                                                                                  >  2:620548/1‑150 (MQ=255)
                                                      ttAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACg                                                                                                <  1:620548/150‑1 (MQ=255)
                                                          cACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagca                                                                                                                            >  3:122105‑M2/1‑92 (MQ=255)
                                                          cACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagca                                                                                                                            <  4:122105‑M2/118‑27 (MQ=255)
                                                          cACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAAc                                                                                            >  2:224585/1‑150 (MQ=255)
                                                             tCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTgc                                                                                                                                                 >  4:150383/1‑94 (MQ=255)
                                                             tCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTgc                                                                                                                                                 <  3:150383/94‑1 (MQ=255)
                                                                gTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATc                                                                                      >  1:454260/1‑150 (MQ=255)
                                                                 tATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCt                                                                                     >  1:186193/1‑150 (MQ=255)
                                                                  aTCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCtt                                                                                    <  1:182691/150‑1 (MQ=255)
                                                                    cAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatga                                                                                  >  4:309796‑M2/1‑82 (MQ=255)
                                                                     aaCCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTgcgccg                                                                                                                                             <  2:337829/90‑3 (MQ=255)
                                                                     aaCCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAg                                                                                                                                             >  1:337829/1‑90 (MQ=255)
                                                                     aaCCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGc                                                                                 >  3:353349/1‑150 (MQ=255)
                                                                        cATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgaccct                                                                              <  1:42895‑M2/150‑73 (MQ=255)
                                                                        cATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGtt                                                                              <  2:106464/150‑1 (MQ=255)
                                                                           aaaaCGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTACAGGGCGGCGTAGTGCTGTCGACGTGCAACCGCACGGAACTTTa                                                                                        <  1:330649/137‑1 (MQ=255)
                                                                             aaCGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAaga                                                                         >  1:1962/1‑150 (MQ=255)
                                                                                ggCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCa                                                                      <  2:49101/150‑1 (MQ=255)
                                                                                 gCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTg                                                                                                                                    <  1:40271/87‑1 (MQ=255)
                                                                                 gCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTg                                                                                                                                    >  2:40271/1‑87 (MQ=255)
                                                                                     cTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGACCTTTATCTTAGCGTTGAAGAGCAGGACa                                                                 <  2:568531/150‑1 (MQ=255)
                                                                                       gTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAAc                                                               <  1:694698/150‑1 (MQ=255)
                                                                                         aTCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCt                                                             >  4:228380/1‑150 (MQ=255)
                                                                                         aTCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCt                                                             <  3:228380/150‑1 (MQ=255)
                                                                                         aTCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCt                                                             >  2:484956/1‑150 (MQ=255)
                                                                                            gCTGCGAGAACGTGTCTCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcg                                                                   >  1:387180‑M2/1‑58 (MQ=255)
                                                                                            gCTGCGAGAACGTGTACCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcg                                                                   <  2:387180‑M2/141‑84 (MQ=255)
                                                                                                   gaACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaaggagactaaccctaccaccggcggtcgtacttaccgctgacatgaccctgttagcactcggtatcaagcataaaag                                                   <  2:182691‑M2/150‑100 (MQ=255)
                                                                                                    aaCGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGt                                                  <  1:497305/150‑1 (MQ=255)
                                                                                                     aCGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagc                                                                                                                             >  3:56122‑M2/1‑49 (MQ=255)
                                                                                                     aCGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagc                                                                                                                             <  4:56122‑M2/74‑26 (MQ=255)
                                                                                                      cGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGa                                                                                                              <  3:66584/88‑1 (MQ=255)
                                                                                                      cGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGa                                                                                                              >  4:66584/1‑88 (MQ=255)
                                                                                                      cGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTa                                                <  2:618374/150‑1 (MQ=255)
                                                                                                      cGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTa                                                >  1:529756/1‑150 (MQ=255)
                                                                                                          tATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCa                                                                                                        >  4:5468/1‑90 (MQ=255)
                                                                                                          tATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCa                                                                                                        <  3:5468/90‑1 (MQ=255)
                                                                                                          tATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCCAGAGGCGTTAATcc                                            >  3:284809/1‑150 (MQ=255)
                                                                                                          tATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATcc                                            >  2:596303/1‑150 (MQ=255)
                                                                                                           aTCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACg                                                                                                >  2:91310/1‑97 (MQ=255)
                                                                                                           aTCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACg                                                                                                <  1:91310/97‑1 (MQ=255)
                                                                                                             cGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcaggctaaccctatcaactgtggtattatttcccgcagacatgacccttttagcactcgctatcaaccataaaacgtaacctgta                                         <  2:612147‑M2/150‑110 (MQ=255)
                                                                                                             cGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTCTCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCt                                         >  3:29395/1‑150 (MQ=255)
                                                                                                             cGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCt                                         <  1:224585/150‑1 (MQ=255)
                                                                                                             cGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCt                                         >  1:428723/1‑150 (MQ=255)
                                                                                                               ttttCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTgg                                       <  1:752612/150‑1 (MQ=255)
                                                                                                                     ccGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACTTGTTACCTCACGGTACTTTTGCTTATCTTTTAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGc                                 >  1:452774/1‑150 (MQ=255)
                                                                                                                           aaGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTAt                           <  4:353349/150‑1 (MQ=255)
                                                                                                                             gCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCgtgg                                                                                                                       >  2:690527/1‑56 (MQ=255)
                                                                                                                             gCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCgtgg                                                                                                                       <  1:690527/56‑1 (MQ=255)
                                                                                                                             gCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTc                                                                                                                >  1:20911/1‑63 (MQ=255)
                                                                                                                             gCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTc                                                                                                                <  2:20911/63‑1 (MQ=255)
                                                                                                                              cTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcc                                                                                             <  1:628065‑M2/81‑58 (MQ=255)
                                                                                                                              cTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcc                                                                                             >  2:628065‑M2/1‑24 (MQ=255)
                                                                                                                              cTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcc                                                                                             >  2:250608‑M2/1‑24 (MQ=255)
                                                                                                                               tCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATcaca                       >  2:699275/1‑150 (MQ=255)
                                                                                                                                cGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACaa                      <  2:1962/150‑1 (MQ=255)
                                                                                                                                 gATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataacacggcacctgtattgctgcgagaacgtgtatc                     <  3:157351‑M2/150‑130 (MQ=255)
                                                                                                                                    cAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCtt                  >  4:75116/1‑150 (MQ=255)
                                                                                                                                         gcTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgc             <  3:355116‑M2/150‑138 (MQ=255)
                                                                                                                                         gcTTGACAGCCTGcttacgcatcctgtatgatgcaa                                                                                                                               >  1:449786‑M2/1‑13 (MQ=255)
                                                                                                                                         gcTTGACAGCCTGcttacgcatcctgtatgatgcaa                                                                                                                               <  2:449786‑M2/36‑24 (MQ=255)
                                                                                                                                          cTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgcc            <  1:556255‑M2/150‑139 (MQ=255)
                                                                                                                                          cTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTAATgaa            <  1:699275/150‑1 (MQ=255)
                                                                                                                                              aCAGCCTGcttacgcatcctgtatgatgcaagcagactaa                                                                                                                      >  1:123546‑M2/1‑8 (MQ=255)
                                                                                                                                                aGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttt                                                                            >  3:242054‑M2/1‑6 (MQ=255)
                                                                                                                                                 gCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTAATGAAGAAGATc     <  4:126483/150‑1 (MQ=255)
                                                                                                                                                    tGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTAATGAAGAAGATCTGc  <  2:454260/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTAATGAAGAAGATCTGC  >  NC_000913_3_pae_tpiA/1263669‑1263966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.