New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3587430 =	40 (1.030)	4 (0.110)	4/266	5.1	8.9%	coding (684/744 nt)	ugpQ	glycerophosphodiester phosphodiesterase, cytosolic
	?	NC_000913_3_pae_tpiA	3587464 =	45 (1.240)					coding (650/744 nt)	ugpQ	glycerophosphodiester phosphodiesterase, cytosolic
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCAGCAGCATATGCTGCCGGAGAGGAGAAACGGCGACATGCTGAATCAGCCCAGCACGCCGCAGCCTGACATTCCGTTGAAAACTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGAGTAACTTATGATTGAGATGAATAGAGACGCAGCCCAGCCGCGCG  >  NC_000913_3_pae_tpiA/3587287‑3587574                                                                                                                                                |                                                                                                                                                 tCAGCAGCATATGCTGCCGGAGAGGAGAAACGGCGACATGCTGAATCAGCCCAGCACGCCGCAGCCTGACATTCCGTTGAAAACTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCAACGGTACAGATGCAATCCACACCCCa                                                                                                                                             >  1:403005/1‑149 (MQ=255)   agcagcATATGCTGCCGGAGAGGAGAAACGGCGACATGCTGAATCAGCCCAGCACGCCGCAGCCTGACATTCCGTTGAAAACTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGGTGCAATCCACACCCCGgc                                                                                                                                           >  2:12088/1‑149 (MQ=255)                         gagaAACGGCGACATGCTGAATCAGCCCAGCACGCCGCAGCCTGACATTCCGTTGAAAACTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTg                                                                                                                     <  1:49883/149‑1 (MQ=255)                             aaCGGCGACATGCTGAATCAGCCCAGCACGCCGCAGCCTGACATTCCGTTGAAAACTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGt                                                                                                                 <  2:496057/149‑1 (MQ=255)                                          tGAATCAGCCCAGCACGCCGCAGCCTGACATTCCGTTGAAAACTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGtat                                                                                                    >  1:659750/1‑149 (MQ=255)                                            aaTCAGCCCAGCACGCCGCAGCCTGACATTCCGTTGAAAACTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAActct                                                                                                                                <  2:285397/119‑1 (MQ=255)                                            aaTCAGCCCAGCACGCCGCAGCCTGACATTCCGTTGAAAACTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAActct                                                                                                                                >  1:285397/1‑119 (MQ=255)                                                            cgcAGCCTGACATTCCGTTGAAAACTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTc                                                                                  <  2:583062/149‑1 (MQ=255)                                                                gCCTGACATTCCGTTGAAAACTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGc                                                                              <  1:216199/149‑1 (MQ=255)                                                                        ttCCGTTGAAAACTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCa                                                                      >  2:363899/1‑149 (MQ=255)                                                                          ccGTTGCAAACTATTGAGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCCCACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTACAAACCAGAATCCGCAGTCCTGCGTCTTTCAAc                                                                    >  2:221638/1‑149 (MQ=255)                                                                          ccGTTGAAAACGATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAAc                                                                    <  2:416001/149‑1 (MQ=255)                                                                              tGAAAACTATTGGGCCGTAAAGTTCGAACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCCGCGCAGCAACCCTGCTGCGCGCTGCGGTTTATTGACGGTATACACCAGACTCCGCAGTCCGGCGTCTTTCAACTGCa                                                                <  2:164833/149‑1 (MQ=255)                                                                                aaaaCTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATc                                                              <  2:103510/149‑1 (MQ=255)                                                                                  aaCTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGTTGCAATCCACACGCCAGCGCAGCAACTCTGCTGCGCGCTGGGGGTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCGTTCAACTGCATCAc                                                            >  1:366532/1‑149 (MQ=255)                                                                                     tATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGGTGCAATCCACACCCGAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTcg                                                         >  1:601852/1‑149 (MQ=255)                                                                                     tATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCAAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTcg                                                         >  1:601834/1‑149 (MQ=255)                                                                                      aTTGCGCCTGAAAGTTCCTACCAACCACGTCAATCGCATCGGTACAGATGCAAGCCACACCCCAGCGCAGCAACTCTGTGGCGTGTTGTGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTcgc                                                        <  1:161277/149‑1 (MQ=255)                                                                                           gCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCttt                                                   >  1:438294/1‑149 (MQ=255)                                                                                              gTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTAtt                                                >  2:364746/1‑149 (MQ=255)                                                                                              gTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTGTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTAtt                                                <  1:363899/149‑1 (MQ=255)                                                                                               tAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTg                                               >  1:43000/1‑149 (MQ=255)                                                                                                gaggTTCGGACCATTCACGTCAATCGCATGGGTACAGATGCAAGCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAATCCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGa                                              <  2:340859/146‑1 (MQ=255)                                                                                                aaaGTTCGGACCAATTACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGa                                              <  2:163442/149‑1 (MQ=255)                                                                                                    ttCGGAGCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACCCGCGCTTTATTGGGTaa                                          >  1:677539/1‑149 (MQ=255)                                                                                                            aaTCACGTCAATCGCATCGGTACAGATGCACTCCCCCCGGCAGCTGAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCCCTTTATTGAGTAACTTTTGAt                                  >  1:336266/1‑149 (MQ=255)                                                                                                             aTCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGAGTAACTTATGAtt                                 <  1:562763/149‑1 (MQ=255)                                                                                                             aTCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGAGTAACTTATGAtt                                 <  2:43000/149‑1 (MQ=255)                                                                                                             aTCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGAGTAACTTATGAtt                                 >  2:527433/1‑149 (MQ=255)                                                                                                               cACGACAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTTGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCTGGCGTCTTTCATCTGCATCATTCGCGCTTTATTGAGTAACTTATGATTga                               <  1:577869/149‑1 (MQ=255)                                                                                                                aCGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAAAATCATCAGTGCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGAGTAACTTATGATTgag                              >  1:331219/1‑149 (MQ=255)                                                                                                                   tCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGAGTAACTTATGATTGAGATg                           >  1:589723/1‑149 (MQ=255)                                                                                                                          cATCTGTACAGATGCAATCCACTCCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCCCAGTCCGGCGTCTTTCAACTGCATCCCTCGCTCTTTATTGAGTAACTTATGATTGAGATGAATagag                    <  2:554538/149‑1 (MQ=255)                                                                                                                          cATCGGTACATATCCAATCCACACCCCCGCCCAGCAACTCTCCTGCGCGCTGGGGCTCACTGACGGTATAAACCAGAATCCGCAGTCCGTCGTCTTTCAACTGCATCACTCGCGCTTTATTGAGTAACTTATGATTGAGATGAATagag                    <  1:158396/149‑1 (MQ=255)                                                                                                                           aTCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGAGTAACTTATGATTGAGATGAATAgaga                   >  1:358255/1‑149 (MQ=255)                                                                                                                              ggTACAGATACAATCAAAACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGAGTAACTTATGATTGAGATGAATAGAGACGc                >  2:151273/1‑149 (MQ=255)                                                                                                                                     aTGCAATCCACACCCCAGCGCAGCAACTCTGCTACGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGAGTAACTAATGATTGAGATGAATAGAGACGcagcccag         >  1:337631/1‑149 (MQ=255)                                                                                                                                      tGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGAGTAACTTATGATTGAGATGAATAGAGACGcagcccagc        >  2:622032/1‑149 (MQ=255)                                                                                                                                            ccACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCACCTGCATCACTCGCGGTTTATTGAGTAACTTATGATTGAGATGAATAGAGAGGCAGCCCACCcgcgag  >  2:485611/1‑147 (MQ=255)                                                                                                                                            ccACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCCCGCTTTATTGAGTAACTTCTGATTGAGATGCATAGAGACGCAGCCCAGCcgcgcg  >  2:281996/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                 TCAGCAGCATATGCTGCCGGAGAGGAGAAACGGCGACATGCTGAATCAGCCCAGCACGCCGCAGCCTGACATTCCGTTGAAAACTATTGGGCCGTAAAGTTCGGACCAATCACGTCAATCGCATCGGTACAGATGCAATCCACACCCCAGCGCAGCAACTCTGCTGCGCGCTGGGGTTTATTGACGGTATAAACCAGAATCCGCAGTCCGGCGTCTTTCAACTGCATCACTCGCGCTTTATTGAGTAACTTATGATTGAGATGAATAGAGACGCAGCCCAGCCGCGCG  >  NC_000913_3_pae_tpiA/3587287‑3587574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.